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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:1074.3 nTPM
FANTOM5:1682.6 Scaled Tags Per Million
Pig:404.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003819Antibody CAB024907Antibody CAB080183
Glial cells Not detectedNot detectedNot detected
Neuronal cells LowNot detectedNot detected







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1074.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1074.3
Samples: 246

Max nTPM: 2467.3
Min nTPM: 196.1
Std nTPM: 370.5
Median nTPM: 1025.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2467.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 2356.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 2029.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1990.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1970.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1928.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1917.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1904.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1901.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1883.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1862.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1804.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1796.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1773.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1731.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1704.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1689.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1684.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1630.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1618.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1617.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1600.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1575.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1565.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1565.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1517.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1503.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 1493.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1481.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1480.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1480.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1471.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1471.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1452.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1441.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1435.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1427.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1406.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1406.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1395.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1391.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1390.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1389.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1389.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1372.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 1368.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1366.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1359.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1358.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1354.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1353.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1346.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1334.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1332.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1312.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1306.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1290.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1286.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1279.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1275.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1274.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1273.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1263.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1260.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1259.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1252.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1244.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1241.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1234.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1231.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1226.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1223.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1220.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1215.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1210.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1208.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 1208.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 1203.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1196.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1186.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1185.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1172.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1169.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1162.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1158.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1155.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1154.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1147.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1146.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1145.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1144.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1141.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1140.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1137.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1125.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1120.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1119.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 1117.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1112.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 1107.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1105.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1104.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1097.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1096.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1094.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1091.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1091.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 1077.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1074.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1073.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1068.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 1063.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1062.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1057.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1053.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1044.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1042.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1041.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1040.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1038.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1033.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1027.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1026.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1024.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1023.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1021.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1019.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1019.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1019.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1017.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1015.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1014.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1012.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1012.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1011.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1011.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1010.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1005.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1001.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1000.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 998.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 997.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 992.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 987.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 986.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 985.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 975.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 975.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 970.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 968.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 967.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 966.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 966.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 958.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 957.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 948.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 940.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 938.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 933.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 932.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 932.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 928.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 922.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 914.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 914.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 914.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 910.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 907.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 884.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 879.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 879.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 877.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 876.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 876.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 870.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 870.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 867.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 866.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 863.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 863.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 862.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 862.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 858.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 854.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 844.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 843.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 839.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 837.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 837.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 825.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 823.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 815.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 812.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 800.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 800.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 794.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 794.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 769.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 769.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 766.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 758.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 758.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 758.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 751.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 743.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 734.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 731.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 731.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 730.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 729.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 708.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 705.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 703.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 683.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 681.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 675.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 669.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 665.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 659.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 658.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 652.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 648.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 644.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 637.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 636.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 622.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 615.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 613.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 613.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 609.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 603.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 595.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 589.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 573.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 571.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 464.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 452.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 402.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 387.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 355.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 324.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 313.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 304.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 290.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 201.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 196.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1682.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1682.6
FF:10164-103B2 76 years, female 1682.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

404.2
Pig sample Sample description nTPM
Caudate
nTPM: 404.2
Samples: 4

Max nTPM: 497.0
Min nTPM: 355.8
Sample A Female 355.8
Sample B Female 405.8
Sample C Male 497.0
Sample D Male 358.0

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