MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:443.2 nTPM
HPA Brain:644.1 nTPM
GTEx:443.2 nTPM
FANTOM5:611.6 Scaled Tags Per Million
Pig:553.8 nTPM
Mouse:2567.6 nTPM
Allen mouse:17.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 644.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 474.2
2828 Female, age 72, unknown 668.1
1827 Male, age 72, unknown 561.4
2586 Male, age 75, left hemisphere 550.8
2219 Male, age 76, both hemispheres 534.3
1870 Female, age 42, unknown 498.3
2019 Male, age 18, unknown 422.9
1833 Male, age 53, unknown 404.5
2411 Female, age 72, unknown 404.1
1830 Male, age 51, unknown 354.0
2666 Male, age 74, left hemisphere 343.5
Dorsal raphe nucleus
nTPM: 558.8
2298 Female, age 72, unknown 656.8
2016 Female, age 72, unknown 643.0
2047 Male, age 72, unknown 547.4
1828 Male, age 53, unknown 540.2
2750 Male, age 76, both hemispheres 406.7
Inferior colliculus
nTPM: 531.2
2097 Female, age 72, unknown 585.2
1848 Female, age 42, unknown 557.7
1890 Male, age 53, unknown 494.4
2849 Male, age 72, unknown 487.4
Median raphe nucleus
nTPM: 494.7
2220 Male, age 76, midline 494.7
Periaquaductal grey, anterior
nTPM: 541.4
1795 Male, age 51, unknown 634.8
1947 Male, age 18, unknown 519.3
2502 Female, age 75, unknown 470.0
Periaquaductal grey, dorsal
nTPM: 612.8
1840 Male, age 53, unknown 686.1
2850 Male, age 76, both hemispheres 644.1
1831 Male, age 72, unknown 625.0
2464 Female, age 72, unknown 496.2
Periaquaductal grey, lateral
nTPM: 606.3
2053 Male, age 18, unknown 657.5
2272 Male, age 74, both hemispheres 592.2
2140 Male, age 76, both hemispheres 569.3
Pretectal area
nTPM: 644.1
2273 Male, age 74, both hemispheres 854.0
1944 Female, age 72, unknown 766.7
2667 Female, age 75, unknown 766.0
2224 Female, age 72, unknown 691.7
1817 Female, age 42, unknown 665.2
1816 Male, age 51, unknown 649.0
1815 Male, age 53, unknown 607.2
2825 Male, age 18, unknown 554.8
2007 Male, age 72, unknown 543.1
2407 Male, age 75, both hemispheres 509.5
2316 Male, age 76, right hemisphere 477.6
Red nucleus
nTPM: 398.5
2725 Female, age 75, unknown 528.2
1821 Female, age 72, unknown 487.7
2503 Female, age 72, unknown 475.2
2769 Male, age 72, unknown 398.7
2785 Male, age 18, unknown 393.9
2227 Male, age 72, unknown 386.8
1954 Female, age 42, unknown 383.7
1865 Male, age 51, unknown 383.6
1904 Male, age 53, unknown 377.7
2823 Male, age 76, right hemisphere 371.6
2588 Male, age 74, left hemisphere 333.5
2584 Male, age 75, left hemisphere 261.0
Substantia nigra
nTPM: 546.8
1916 Female, age 42, unknown 777.2
1889 Female, age 72, unknown 615.6
1851 Male, age 51, unknown 611.1
2699 Male, age 18, unknown 601.3
2409 Female, age 72, unknown 551.9
1941 Male, age 53, unknown 534.7
2241 Male, age 72, unknown 525.0
2665 Male, age 74, both hemispheres 423.4
2590 Female, age 75, unknown 422.3
2583 Male, age 75, right hemisphere 405.0
Superior colliculus
nTPM: 531.3
2087 Female, age 72, unknown 676.8
1796 Male, age 53, unknown 622.1
2261 Male, age 18, unknown 559.2
1995 Male, age 72, unknown 552.6
2664 Male, age 75, both hemispheres 531.2
1839 Male, age 51, unknown 494.2
1913 Female, age 42, unknown 490.5
2587 Male, age 74, left hemisphere 478.0
2668 Female, age 75, unknown 470.4
1895 Male, age 76, right hemisphere 437.4
Ventral tegmental area
nTPM: 530.7
1915 Female, age 42, unknown 598.7
1942 Male, age 51, unknown 547.9
2410 Female, age 72, unknown 541.8
2021 Male, age 53, unknown 541.3
2218 Male, age 76, both hemispheres 521.8
2223 Female, age 72, unknown 432.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 443.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 443.2
Samples: 139

Max nTPM: 1369.2
Min nTPM: 86.8
Std nTPM: 214.8
Median nTPM: 416.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 1369.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1169.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1168.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 977.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 956.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 913.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 855.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 845.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 783.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 769.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 761.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 611.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 611.6
FF:10158-103A5 76 years, female 611.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 553.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 514.1
Samples: 4

Max nTPM: 544.6
Min nTPM: 449.9
Sample A Female 544.6
Sample B Female 449.9
Sample C Male 530.2
Sample D Male 531.8
Midbrain
nTPM: 525.4
Samples: 4

Max nTPM: 616.6
Min nTPM: 418.5
Sample A Female 616.6
Sample B Female 562.4
Sample C Male 504.1
Sample D Male 418.5
Periaqueductal gray
nTPM: 553.8
Samples: 3

Max nTPM: 641.5
Min nTPM: 461.4
Sample B Female 641.5
Sample C Male 558.5
Sample D Male 461.4
Superior colliculi
nTPM: 420.3
Samples: 4

Max nTPM: 491.4
Min nTPM: 286.6
Sample A Female 491.4
Sample B Female 286.6
Sample C Male 456.5
Sample D Male 446.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2567.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 2567.6
Samples: 4

Max nTPM: 2700.5
Min nTPM: 2419.3
Sample A Male 2606.1
Sample B Male 2419.3
Sample C Female 2700.5
Sample D Female 2544.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 17.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.7
1692 Antisense, RP_Baylor_102700, Mouse strain C57BL/6J (56 days, male) 17.7
1691 Antisense, RP_Baylor_102700, Mouse strain C57BL/6J (56 days, male) 9.5

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