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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:51.2 nTPM
HPA Brain:155.1 nTPM
GTEx:51.2 nTPM
FANTOM5:257.2 Scaled Tags Per Million
Pig:92.2 nTPM
Mouse:62.2 nTPM
Allen mouse:16.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

155.1
Sample id Sample description nTPM
Amygdala
nTPM: 153.6
2514 Male, age 75, right hemisphere 172.8
2814 Male, age 76, right hemisphere 157.2
2695 Female, age 67, right hemisphere 151.2
2517 Female, age 94, left hemisphere 147.7
1987 Female, age 91, left hemisphere 139.4
Basal amygdala
nTPM: 145.1
2609 Male, age 75, right hemisphere 165.4
2110 Male, age 80, left hemisphere 163.6
2685 Female, age 94, left hemisphere 153.9
2243 Female, age 91, right hemisphere 138.6
2827 Female, age 67, right hemisphere 127.8
1955 Male, age 76, both hemispheres 121.3
Central amygdala
nTPM: 153.1
2515 Male, age 75, right hemisphere 167.6
2826 Female, age 94, left hemisphere 161.6
2239 Male, age 80, left hemisphere 153.5
1905 Male, age 76, both hemispheres 143.8
2701 Female, age 91, right hemisphere 138.8
Corticomedial amygdala
nTPM: 138.4
2428 Male, age 75, right hemisphere 160.5
2829 Male, age 80, left hemisphere 158.2
2429 Female, age 94, left hemisphere 137.0
2242 Female, age 91, right hemisphere 134.1
2535 Female, age 67, right hemisphere 120.6
2240 Male, age 76, both hemispheres 120.0
Lateral amygdala
nTPM: 155.1
2516 Male, age 75, right hemisphere 211.4
1883 Male, age 76, both hemispheres 156.8
2534 Female, age 94, left hemisphere 147.4
2830 Female, age 67, right hemisphere 143.3
2256 Male, age 80, left hemisphere 141.2
2255 Female, age 91, right hemisphere 130.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 51.2
Samples: 152

Max nTPM: 113.2
Min nTPM: 5.1
Std nTPM: 14.0
Median nTPM: 49.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 113.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 96.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 87.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 87.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 84.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 82.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 80.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 77.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 76.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 75.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 74.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 72.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 72.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 70.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 69.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 69.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 67.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 66.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 65.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 64.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 64.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 64.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 63.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 62.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 62.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 61.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 60.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 60.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 60.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 59.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 59.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 58.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 58.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 58.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 58.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 57.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 57.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 56.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 56.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 56.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 55.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 55.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 55.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 55.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 54.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 54.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 54.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 54.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 54.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 54.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 54.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 54.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 53.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 53.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 52.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 52.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 52.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 52.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 52.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 52.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 51.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 51.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 51.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 51.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 51.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 50.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 50.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 50.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 50.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 50.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 50.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 50.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 50.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 50.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 50.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 49.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 49.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 49.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 49.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 49.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 49.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 49.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 48.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 48.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 48.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 48.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 48.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 48.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 48.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 47.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 47.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 47.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 47.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 47.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 46.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 46.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 46.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 45.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 45.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 45.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 45.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 44.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 44.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 44.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 44.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 44.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 44.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 43.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 43.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 43.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 43.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 43.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 43.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 43.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 43.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 42.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 41.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 41.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 41.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 41.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 41.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 40.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 40.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 40.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 40.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 40.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 40.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 39.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 39.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 38.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 38.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 38.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 38.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 37.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 37.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 37.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 37.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 36.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 36.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 36.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 35.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 35.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 34.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 34.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 33.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 31.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 30.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 30.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 25.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 24.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 21.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 5.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

257.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 257.2
FF:10151-102I7 76 years, female 257.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.2
Pig sample Sample description nTPM
Amygdala
nTPM: 92.2
Samples: 4

Max nTPM: 116.2
Min nTPM: 79.6
Sample A Female 116.2
Sample B Female 79.6
Sample C Male 84.1
Sample D Male 88.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

62.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 62.2
Samples: 4

Max nTPM: 68.5
Min nTPM: 57.9
Sample A Male 68.5
Sample B Male 61.7
Sample C Female 57.9
Sample D Female 60.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

16.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.5
69838371 Antisense, RP_050301_02_G03, Mouse strain C57BL/6J (56 days, male) 16.5

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