MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.3 nTPM
HPA Brain:170.8 nTPM
GTEx:56.3 nTPM
FANTOM5:427.9 Scaled Tags Per Million
Pig:130.9 nTPM
Mouse:64.3 nTPM
Allen mouse:10.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 170.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 159.1
2411 Female, age 72, unknown 196.8
1833 Male, age 53, unknown 179.3
2586 Male, age 75, left hemisphere 177.8
1830 Male, age 51, unknown 169.1
1870 Female, age 42, unknown 156.7
2019 Male, age 18, unknown 154.1
2828 Female, age 72, unknown 154.0
1827 Male, age 72, unknown 147.5
2219 Male, age 76, both hemispheres 129.0
2666 Male, age 74, left hemisphere 126.4
Dorsal raphe nucleus
nTPM: 135.7
2750 Male, age 76, both hemispheres 160.2
2016 Female, age 72, unknown 136.8
1828 Male, age 53, unknown 130.6
2298 Female, age 72, unknown 129.0
2047 Male, age 72, unknown 121.9
Inferior colliculus
nTPM: 127.8
1848 Female, age 42, unknown 142.9
2849 Male, age 72, unknown 138.9
1890 Male, age 53, unknown 120.0
2097 Female, age 72, unknown 109.6
Median raphe nucleus
nTPM: 140.5
2220 Male, age 76, midline 140.5
Periaquaductal grey, anterior
nTPM: 151.4
2502 Female, age 75, unknown 182.8
1947 Male, age 18, unknown 140.6
1795 Male, age 51, unknown 130.7
Periaquaductal grey, dorsal
nTPM: 122.6
2464 Female, age 72, unknown 141.5
1840 Male, age 53, unknown 123.7
1831 Male, age 72, unknown 120.7
2850 Male, age 76, both hemispheres 104.6
Periaquaductal grey, lateral
nTPM: 129.3
2272 Male, age 74, both hemispheres 136.7
2053 Male, age 18, unknown 136.4
2140 Male, age 76, both hemispheres 114.9
Pretectal area
nTPM: 141.8
2407 Male, age 75, both hemispheres 177.6
1817 Female, age 42, unknown 154.5
1815 Male, age 53, unknown 151.3
2825 Male, age 18, unknown 146.7
2007 Male, age 72, unknown 143.9
2667 Female, age 75, unknown 139.5
2316 Male, age 76, right hemisphere 139.2
2224 Female, age 72, unknown 134.9
2273 Male, age 74, both hemispheres 133.3
1816 Male, age 51, unknown 128.9
1944 Female, age 72, unknown 109.5
Red nucleus
nTPM: 170.8
2503 Female, age 72, unknown 197.1
1821 Female, age 72, unknown 196.1
2588 Male, age 74, left hemisphere 192.1
1865 Male, age 51, unknown 186.3
1904 Male, age 53, unknown 186.3
2785 Male, age 18, unknown 184.5
2769 Male, age 72, unknown 180.8
2227 Male, age 72, unknown 173.8
1954 Female, age 42, unknown 156.7
2823 Male, age 76, right hemisphere 143.2
2584 Male, age 75, left hemisphere 136.4
2725 Female, age 75, unknown 116.6
Substantia nigra
nTPM: 147.0
2583 Male, age 75, right hemisphere 170.6
2590 Female, age 75, unknown 164.0
1851 Male, age 51, unknown 163.7
1889 Female, age 72, unknown 149.6
1916 Female, age 42, unknown 147.4
2409 Female, age 72, unknown 147.2
2699 Male, age 18, unknown 147.1
1941 Male, age 53, unknown 142.5
2241 Male, age 72, unknown 137.1
2665 Male, age 74, both hemispheres 100.7
Superior colliculus
nTPM: 158.1
1913 Female, age 42, unknown 177.3
2664 Male, age 75, both hemispheres 172.0
2668 Female, age 75, unknown 167.0
1895 Male, age 76, right hemisphere 165.8
2587 Male, age 74, left hemisphere 165.0
1995 Male, age 72, unknown 162.2
1839 Male, age 51, unknown 160.4
1796 Male, age 53, unknown 151.1
2261 Male, age 18, unknown 140.7
2087 Female, age 72, unknown 119.3
Ventral tegmental area
nTPM: 153.7
2410 Female, age 72, unknown 204.4
2223 Female, age 72, unknown 162.8
1915 Female, age 42, unknown 143.0
2218 Male, age 76, both hemispheres 142.7
1942 Male, age 51, unknown 140.1
2021 Male, age 53, unknown 129.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 56.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.3
Samples: 139

Max nTPM: 151.9
Min nTPM: 23.1
Std nTPM: 20.3
Median nTPM: 51.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 151.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 119.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 116.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 113.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 105.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 103.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 99.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 90.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 88.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 88.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 86.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 427.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 427.9
FF:10158-103A5 76 years, female 427.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 130.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 121.9
Samples: 4

Max nTPM: 138.9
Min nTPM: 87.9
Sample A Female 138.0
Sample B Female 87.9
Sample C Male 138.9
Sample D Male 122.7
Midbrain
nTPM: 131.0
Samples: 4

Max nTPM: 138.1
Min nTPM: 124.9
Sample A Female 130.0
Sample B Female 124.9
Sample C Male 130.8
Sample D Male 138.1
Periaqueductal gray
nTPM: 104.4
Samples: 3

Max nTPM: 112.4
Min nTPM: 98.0
Sample B Female 112.4
Sample C Male 102.9
Sample D Male 98.0
Superior colliculi
nTPM: 120.0
Samples: 4

Max nTPM: 140.0
Min nTPM: 71.9
Sample A Female 132.8
Sample B Female 71.9
Sample C Male 140.0
Sample D Male 135.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 64.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 64.3
Samples: 4

Max nTPM: 69.8
Min nTPM: 57.6
Sample A Male 57.6
Sample B Male 69.8
Sample C Female 67.1
Sample D Female 62.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.3
69838371 Antisense, RP_050301_02_G03, Mouse strain C57BL/6J (56 days, male) 10.3

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