MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.2 nTPM
HPA Brain:55.2 nTPM
GTEx:12.2 nTPM
FANTOM5:38.5 Scaled Tags Per Million
Pig:35.0 nTPM
Mouse:21.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 55.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.2
2586 Male, age 75, left hemisphere 60.6
2666 Male, age 74, left hemisphere 54.2
1827 Male, age 72, unknown 54.1
1830 Male, age 51, unknown 52.2
1833 Male, age 53, unknown 51.6
1870 Female, age 42, unknown 50.2
2019 Male, age 18, unknown 49.2
2828 Female, age 72, unknown 48.9
2219 Male, age 76, both hemispheres 45.8
2411 Female, age 72, unknown 45.6
Dorsal raphe nucleus
nTPM: 42.8
2047 Male, age 72, unknown 43.7
1828 Male, age 53, unknown 43.5
2016 Female, age 72, unknown 43.1
2298 Female, age 72, unknown 42.6
2750 Male, age 76, both hemispheres 41.0
Inferior colliculus
nTPM: 55.2
2849 Male, age 72, unknown 60.2
1848 Female, age 42, unknown 55.9
2097 Female, age 72, unknown 54.5
1890 Male, age 53, unknown 50.0
Median raphe nucleus
nTPM: 40.2
2220 Male, age 76, midline 40.2
Periaquaductal grey, anterior
nTPM: 52.5
1947 Male, age 18, unknown 56.1
2502 Female, age 75, unknown 53.9
1795 Male, age 51, unknown 47.4
Periaquaductal grey, dorsal
nTPM: 45.2
1840 Male, age 53, unknown 50.7
1831 Male, age 72, unknown 47.2
2464 Female, age 72, unknown 45.2
2850 Male, age 76, both hemispheres 37.7
Periaquaductal grey, lateral
nTPM: 44.5
2053 Male, age 18, unknown 49.7
2140 Male, age 76, both hemispheres 42.6
2272 Male, age 74, both hemispheres 41.3
Pretectal area
nTPM: 51.2
1816 Male, age 51, unknown 59.0
1817 Female, age 42, unknown 56.6
2007 Male, age 72, unknown 56.4
2407 Male, age 75, both hemispheres 55.8
1944 Female, age 72, unknown 53.1
2825 Male, age 18, unknown 51.9
1815 Male, age 53, unknown 51.6
2316 Male, age 76, right hemisphere 47.1
2667 Female, age 75, unknown 45.8
2224 Female, age 72, unknown 44.6
2273 Male, age 74, both hemispheres 41.6
Red nucleus
nTPM: 51.9
2584 Male, age 75, left hemisphere 60.0
2588 Male, age 74, left hemisphere 56.2
2503 Female, age 72, unknown 54.4
1821 Female, age 72, unknown 53.6
2725 Female, age 75, unknown 53.3
1865 Male, age 51, unknown 52.8
1954 Female, age 42, unknown 52.4
2785 Male, age 18, unknown 51.7
1904 Male, age 53, unknown 49.0
2227 Male, age 72, unknown 48.4
2769 Male, age 72, unknown 48.4
2823 Male, age 76, right hemisphere 42.8
Substantia nigra
nTPM: 48.8
2665 Male, age 74, both hemispheres 57.4
2583 Male, age 75, right hemisphere 56.4
2409 Female, age 72, unknown 52.5
1889 Female, age 72, unknown 52.3
2590 Female, age 75, unknown 51.2
1941 Male, age 53, unknown 45.3
1916 Female, age 42, unknown 44.7
2241 Male, age 72, unknown 44.3
1851 Male, age 51, unknown 44.2
2699 Male, age 18, unknown 39.6
Superior colliculus
nTPM: 53.1
1796 Male, age 53, unknown 58.3
2664 Male, age 75, both hemispheres 56.1
1839 Male, age 51, unknown 55.0
2261 Male, age 18, unknown 55.0
1895 Male, age 76, right hemisphere 54.6
2668 Female, age 75, unknown 52.6
2587 Male, age 74, left hemisphere 51.6
2087 Female, age 72, unknown 51.1
1913 Female, age 42, unknown 48.7
1995 Male, age 72, unknown 48.1
Ventral tegmental area
nTPM: 44.9
2223 Female, age 72, unknown 50.7
2410 Female, age 72, unknown 48.3
1942 Male, age 51, unknown 43.4
2021 Male, age 53, unknown 43.2
1915 Female, age 42, unknown 42.4
2218 Male, age 76, both hemispheres 41.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.2
Samples: 139

Max nTPM: 18.4
Min nTPM: 7.1
Std nTPM: 2.3
Median nTPM: 12.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 18.4
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 17.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 17.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 17.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 17.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 16.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 16.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 16.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 16.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 16.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 16.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 38.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.5
FF:10158-103A5 76 years, female 38.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 35.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.2
Samples: 4

Max nTPM: 32.6
Min nTPM: 25.7
Sample A Female 29.7
Sample B Female 25.7
Sample C Male 32.6
Sample D Male 28.6
Midbrain
nTPM: 35.0
Samples: 4

Max nTPM: 42.9
Min nTPM: 27.8
Sample A Female 33.2
Sample B Female 27.8
Sample C Male 42.9
Sample D Male 36.2
Periaqueductal gray
nTPM: 27.1
Samples: 3

Max nTPM: 28.0
Min nTPM: 25.3
Sample B Female 28.0
Sample C Male 27.9
Sample D Male 25.3
Superior colliculi
nTPM: 31.9
Samples: 4

Max nTPM: 38.7
Min nTPM: 23.1
Sample A Female 30.4
Sample B Female 23.1
Sample C Male 38.7
Sample D Male 35.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.4
Samples: 4

Max nTPM: 23.1
Min nTPM: 19.1
Sample A Male 19.1
Sample B Male 22.3
Sample C Female 23.1
Sample D Female 21.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70300995 Antisense, RP_050607_02_H07, Mouse strain C57BL/6J (56 days, male) 0.1

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