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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS EYE FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:965.6 nTPM
GTEx:1622.9 nTPM
FANTOM5:2276.8 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA057100Antibody CAB002053Antibody CAB040560
Glial cells HighHighHigh
Neuronal cells Not detectedNot detectedNot detected







HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

965.6
Sample id Sample description nTPM
Hippocampus
nTPM: 965.6
2529 Female, age 94, left hemisphere 1377.1
1911 Female, age 85, right hemisphere 1010.2
2621 Female, age 67, right hemisphere 999.0
1855 Male, age 76, left hemisphere 853.9
1898 Male, age 80, left hemisphere 818.7
2148 Female, age 91, left hemisphere 734.5

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1622.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 1622.9
Samples: 197

Max nTPM: 6562.4
Min nTPM: 251.4
Std nTPM: 1074.2
Median nTPM: 1341.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 6562.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 6118.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 5567.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 5015.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 4749.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 4671.4
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 4515.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 4325.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 4313.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 4025.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 3533.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 3533.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 3451.8
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 3446.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 3432.2
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 3328.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 3256.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 3169.6
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 3123.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 2920.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 2904.9
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 2830.7
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 2801.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 2677.5
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 2649.5
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 2634.8
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 2606.4
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 2538.7
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 2490.1
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 2419.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 2414.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 2412.3
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 2382.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 2375.2
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 2366.0
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 2363.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 2313.0
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 2306.8
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 2295.4
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 2259.3
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 2168.4
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 2146.2
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 2117.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 2083.9
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 2051.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 2047.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 2016.1
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 2006.9
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 1951.5
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 1947.9
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 1905.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 1885.2
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 1867.5
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 1860.4
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 1851.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 1832.8
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 1828.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 1818.3
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 1799.1
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 1795.2
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 1776.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 1774.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 1753.2
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 1734.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 1730.0
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 1726.1
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 1705.6
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 1684.9
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 1677.4
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 1659.2
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 1645.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 1617.9
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 1617.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 1593.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 1593.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 1578.1
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 1571.3
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 1568.2
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 1533.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 1523.0
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 1521.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 1485.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 1484.8
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 1484.4
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 1481.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 1477.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 1476.5
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 1457.1
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 1446.4
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 1439.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 1418.0
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 1416.5
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 1412.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 1404.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 1386.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 1382.8
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 1367.5
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 1364.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 1341.5
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 1339.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 1320.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 1308.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 1305.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 1297.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 1297.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 1272.7
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 1251.8
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 1236.1
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 1230.1
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 1229.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 1226.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 1216.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 1200.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 1196.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 1184.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 1172.8
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 1164.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 1147.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 1144.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 1140.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 1134.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 1134.1
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 1124.0
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 1119.9
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 1116.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 1107.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 1107.4
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 1068.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 1067.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 1065.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 1065.4
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 1047.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 1041.6
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 1023.4
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 1001.9
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 995.5
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 992.4
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 971.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 965.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 942.7
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 941.1
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 941.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 928.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 922.4
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 916.2
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 915.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 913.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 906.0
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 893.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 892.6
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 873.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 871.6
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 870.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 861.0
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 858.3
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 851.6
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 837.0
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 821.6
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 820.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 806.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 803.0
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 794.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 792.5
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 784.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 777.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 760.3
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 757.8
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 753.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 729.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 724.2
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 721.7
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 721.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 708.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 703.3
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 694.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 690.5
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 666.8
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 666.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 659.5
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 657.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 632.3
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 602.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 598.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 592.9
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 568.3
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 558.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 545.7
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 510.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 460.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 443.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 435.2
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 416.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 415.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 404.3
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 384.2
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 309.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 251.4
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2276.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 2276.8
FF:10153-102I9 76 years, female 2709.1
FF:10169-103B7 60 years, female 1844.5

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