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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:193.4 nTPM
HPA Brain:194.0 nTPM
GTEx:193.4 nTPM
FANTOM5:203.1 Scaled Tags Per Million
Pig:120.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

194.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 152.6
2816 Male, age 47, midline 193.2
2565 Male, age 75, midline 161.7
2194 Female, age 79, both hemispheres 155.0
1981 Female, age 72, midline 135.1
2048 Male, age 55, midline 117.7
Cervical spinal cord, dorsal horn
nTPM: 181.4
2296 Male, age 66, both hemispheres 312.8
2173 Female, age 72, unknown 176.2
1877 Male, age 55, unknown 171.5
2069 Male, age 47, both hemispheres 157.1
2297 Male, age 75, both hemispheres 137.7
2721 Male, age 90, both hemispheres 133.0
Cervical spinal cord, ventral horn
nTPM: 194.0
2480 Male, age 75, both hemispheres 266.8
2820 Female, age 79, both hemispheres 196.5
2068 Male, age 55, unknown 189.3
2295 Male, age 66, both hemispheres 185.8
2809 Male, age 90, both hemispheres 174.2
2098 Female, age 72, unknown 151.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

193.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 193.4
Samples: 159

Max nTPM: 387.7
Min nTPM: 72.1
Std nTPM: 66.8
Median nTPM: 184.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 387.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 385.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 364.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 355.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 346.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 338.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 335.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 331.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 321.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 320.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 307.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 294.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 292.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 286.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 281.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 281.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 278.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 277.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 276.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 274.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 273.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 267.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 266.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 266.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 266.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 261.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 256.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 254.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 254.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 253.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 252.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 247.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 245.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 242.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 241.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 240.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 239.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 237.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 235.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 233.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 231.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 229.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 228.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 224.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 223.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 221.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 221.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 221.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 218.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 218.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 215.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 214.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 213.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 213.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 213.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 212.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 212.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 210.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 209.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 208.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 207.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 205.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 204.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 202.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 202.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 202.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 202.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 202.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 198.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 197.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 196.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 191.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 189.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 189.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 189.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 187.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 186.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 186.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 185.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 184.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 184.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 182.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 181.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 180.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 178.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 178.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 177.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 175.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 174.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 174.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 174.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 174.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 173.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 173.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 172.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 172.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 172.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 170.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 169.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 167.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 166.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 165.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 164.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 163.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 162.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 161.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 160.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 159.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 158.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 156.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 155.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 155.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 155.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 154.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 154.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 154.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 154.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 151.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 146.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 146.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 145.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 143.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 141.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 139.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 138.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 136.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 134.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 132.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 130.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 129.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 124.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 123.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 123.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 121.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 120.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 119.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 118.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 118.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 117.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 116.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 114.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 113.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 112.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 111.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 110.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 107.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 105.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 103.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 102.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 99.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 97.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 96.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 95.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 93.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 89.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 86.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 85.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 74.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 72.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

203.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 203.1
FF:10181-103D1 60 years, female 241.3
FF:10159-103A6 76 years, female 165.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

120.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 105.6
Samples: 4

Max nTPM: 131.7
Min nTPM: 76.6
Sample A Female 131.7
Sample B Female 95.3
Sample C Male 76.6
Sample D Male 118.9
Ventral spinal cord
nTPM: 120.2
Samples: 4

Max nTPM: 144.2
Min nTPM: 102.0
Sample A Female 144.2
Sample B Female 104.3
Sample C Male 102.0
Sample D Male 130.1

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