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KMT5B
HPA
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  • KMT5B
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

KMT5B
Synonyms CGI-85, SUV420H1
Gene descriptioni

Full gene name according to HGNC.

Lysine methyltransferase 5B
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Enzymes
Human disease related genes
Metabolic proteins
Plasma proteins
Potential drug targets
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 11
Cytoband q13.2
Chromosome location (bp) 68154863 - 68213852
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

10
Ensembl ENSG00000110066 (version 109)
Entrez gene 51111
HGNC HGNC:24283
UniProt Q4FZB7 (UniProt - Evidence at protein level)
neXtProt NX_Q4FZB7
GeneCards KMT5B
Antibodypedia KMT5B antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Histone methyltransferase that specifically methylates monomethylated 'Lys-20' (H4K20me1) and dimethylated 'Lys-20' (H4K20me2) of histone H4 to produce respectively dimethylated 'Lys-20' (H4K20me2) and trimethylated 'Lys-20' (H4K20me3) and thus regulates transcription and maintenance of genome integrity 1, 2. In vitro also methylates unmodified 'Lys-20' (H4K20me0) of histone H4 and nucleosomes 3. H4 'Lys-20' trimethylation represents a specific tag for epigenetic transcriptional repression. Mainly functions in pericentric heterochromatin regions, thereby playing a central role in the establishment of constitutive heterochromatin in these regions. KMT5B is targeted to histone H3 via its interaction with RB1 family proteins (RB1, RBL1 and RBL2) (By similarity). Plays a role in myogenesis by regulating the expression of target genes, such as EID3 4. Facilitates TP53BP1 foci formation upon DNA damage and proficient non-homologous end-joining (NHEJ)-directed DNA repair by catalyzing the di- and trimethylation of 'Lys-20' of histone H4 5. May play a role in class switch reconbination by catalyzing the di- and trimethylation of 'Lys-20' of histone H4 (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Chromatin regulator, Methyltransferase, Repressor, Transferase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Myogenesis, Transcription, Transcription regulation
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Metal-binding, S-adenosyl-L-methionine, Zinc
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a protein that contains a SET domain. SET domains appear to be protein-protein interaction domains that mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). The function of this gene has not been determined. Several alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2014]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
KMT5B-201
ENSP00000305899
ENST00000304363
Q4FZB7
[Direct mapping] Histone-lysine N-methyltransferase KMT5B
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0000779 [condensed chromosome, centromeric region]
GO:0003682 [chromatin binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0006281 [DNA repair]
GO:0006325 [chromatin organization]
GO:0006479 [protein methylation]
GO:0007517 [muscle organ development]
GO:0008168 [methyltransferase activity]
GO:0016740 [transferase activity]
GO:0018024 [histone-lysine N-methyltransferase activity]
GO:0032259 [methylation]
GO:0034772 [histone H4-K20 dimethylation]
GO:0034773 [histone H4-K20 trimethylation]
GO:0042799 [histone methyltransferase activity (H4-K20 specific)]
GO:0045830 [positive regulation of isotype switching]
GO:0046872 [metal ion binding]
GO:0140941 []
GO:0140944 []
GO:1904047 [S-adenosyl-L-methionine binding]
GO:2001034 [positive regulation of double-strand break repair via nonhomologous end joining]
Show all
885 aa
99.2 kDa
No 0
KMT5B-203
ENSP00000385965
ENST00000401547
Q4FZB7
[Direct mapping] Histone-lysine N-methyltransferase KMT5B
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0003682 [chromatin binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0006281 [DNA repair]
GO:0006325 [chromatin organization]
GO:0006479 [protein methylation]
GO:0007517 [muscle organ development]
GO:0008168 [methyltransferase activity]
GO:0016740 [transferase activity]
GO:0018024 [histone-lysine N-methyltransferase activity]
GO:0032259 [methylation]
GO:0034772 [histone H4-K20 dimethylation]
GO:0034773 [histone H4-K20 trimethylation]
GO:0042799 [histone methyltransferase activity (H4-K20 specific)]
GO:0045830 [positive regulation of isotype switching]
GO:0046872 [metal ion binding]
GO:0140941 []
GO:0140944 []
GO:1904047 [S-adenosyl-L-methionine binding]
GO:2001034 [positive regulation of double-strand break repair via nonhomologous end joining]
Show all
393 aa
44.6 kDa
No 0
KMT5B-204
ENSP00000384724
ENST00000402185
B7WNX0
[Direct mapping] [histone H4]-N-methyl-L-lysine20 N-methyltransferase KMT5B
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005694 [chromosome]
GO:0006479 [protein methylation]
GO:0007517 [muscle organ development]
GO:0034772 [histone H4-K20 dimethylation]
GO:0042799 [histone methyltransferase activity (H4-K20 specific)]
GO:0046872 [metal ion binding]
GO:0140941 []
GO:0140944 []
Show all
370 aa
42.1 kDa
No 0
KMT5B-205
ENSP00000385005
ENST00000402789
B5MCB3
[Direct mapping] [histone H4]-N-methyl-L-lysine20 N-methyltransferase KMT5B
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005694 [chromosome]
GO:0006479 [protein methylation]
GO:0007517 [muscle organ development]
GO:0034772 [histone H4-K20 dimethylation]
GO:0042799 [histone methyltransferase activity (H4-K20 specific)]
GO:0046872 [metal ion binding]
GO:0140941 []
GO:0140944 []
Show all
402 aa
45.7 kDa
No 0
KMT5B-206
ENSP00000385640
ENST00000405515
Q4FZB7
[Direct mapping] Histone-lysine N-methyltransferase KMT5B
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0003682 [chromatin binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0006281 [DNA repair]
GO:0006325 [chromatin organization]
GO:0006479 [protein methylation]
GO:0007517 [muscle organ development]
GO:0008168 [methyltransferase activity]
GO:0016740 [transferase activity]
GO:0018024 [histone-lysine N-methyltransferase activity]
GO:0032259 [methylation]
GO:0034772 [histone H4-K20 dimethylation]
GO:0034773 [histone H4-K20 trimethylation]
GO:0042799 [histone methyltransferase activity (H4-K20 specific)]
GO:0045830 [positive regulation of isotype switching]
GO:0046872 [metal ion binding]
GO:0140941 []
GO:0140944 []
GO:1904047 [S-adenosyl-L-methionine binding]
GO:2001034 [positive regulation of double-strand break repair via nonhomologous end joining]
Show all
393 aa
44.6 kDa
No 0
KMT5B-208
ENSP00000402921
ENST00000434573
C9JP58
[Direct mapping] Histone-lysine N-methyltransferase KMT5B
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Show all
GO:0005634 [nucleus]
GO:0006479 [protein methylation]
Show all
118 aa
13.1 kDa
No 0
KMT5B-210
ENSP00000406377
ENST00000453170
C9J6S5
[Direct mapping] Histone-lysine N-methyltransferase KMT5B
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0006479 [protein methylation]
GO:0034772 [histone H4-K20 dimethylation]
GO:0042799 [histone methyltransferase activity (H4-K20 specific)]
Show all
814 aa
91.4 kDa
No 0
KMT5B-211
ENSP00000403233
ENST00000458496
C9JFG1
[Direct mapping] Histone-lysine N-methyltransferase KMT5B
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0006479 [protein methylation]
GO:0034772 [histone H4-K20 dimethylation]
GO:0042799 [histone methyltransferase activity (H4-K20 specific)]
Show all
322 aa
36.8 kDa
No 0
KMT5B-215
ENSP00000484858
ENST00000615954
Q4FZB7
[Direct mapping] Histone-lysine N-methyltransferase KMT5B
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0003682 [chromatin binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0006281 [DNA repair]
GO:0006325 [chromatin organization]
GO:0006479 [protein methylation]
GO:0007517 [muscle organ development]
GO:0008168 [methyltransferase activity]
GO:0016740 [transferase activity]
GO:0018024 [histone-lysine N-methyltransferase activity]
GO:0032259 [methylation]
GO:0034772 [histone H4-K20 dimethylation]
GO:0034773 [histone H4-K20 trimethylation]
GO:0042799 [histone methyltransferase activity (H4-K20 specific)]
GO:0045830 [positive regulation of isotype switching]
GO:0046872 [metal ion binding]
GO:0140941 []
GO:0140944 []
GO:1904047 [S-adenosyl-L-methionine binding]
GO:2001034 [positive regulation of double-strand break repair via nonhomologous end joining]
Show all
885 aa
99.2 kDa
No 0
KMT5B-219
ENSP00000515030
ENST00000700523
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Show all
GO:0005515 [protein binding]
GO:0034772 [histone H4-K20 dimethylation]
GO:0042799 [histone methyltransferase activity (H4-K20 specific)]
Show all
713 aa
79.5 kDa
No 0

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