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MS4A4A
HPA
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  • MS4A4A
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

MS4A4A
Synonyms CD20L1, MS4A4, MS4A7
Gene descriptioni

Full gene name according to HGNC.

Membrane spanning 4-domains A4A
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 11
Cytoband q12.2
Chromosome location (bp) 60185657 - 60318080
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

12
Ensembl ENSG00000110079 (version 109)
Entrez gene 51338
HGNC HGNC:13371
UniProt Q96JQ5 (UniProt - Evidence at protein level)
neXtProt NX_Q96JQ5
GeneCards MS4A4A
Antibodypedia MS4A4A antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

May be involved in signal transduction as a component of a multimeric receptor complex.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Receptor
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the membrane-spanning 4A gene family. Members of this nascent protein family are characterized by common structural features, similar intron/exon splice boundaries, and display unique expression patterns in hematopoietic cells and nonlymphoid tissues. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2011]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
MS4A4A-201
ENSP00000338648
ENST00000337908
Q96JQ5
[Direct mapping] Membrane-spanning 4-domains subfamily A member 4A
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0044853 [plasma membrane raft]
Show all
239 aa
25.4 kDa
No 4
MS4A4A-206
ENSP00000434506
ENST00000532114
Q96JQ5
[Direct mapping] Membrane-spanning 4-domains subfamily A member 4A
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0044853 [plasma membrane raft]
Show all
186 aa
19.7 kDa
No 3
MS4A4A-207
ENSP00000497952
ENST00000649552
A0A3B3ITV6
[Direct mapping] Membrane-spanning 4-domains subfamily A member 4A
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
293 aa
32.5 kDa
No 4
MS4A4A-208
ENSP00000506313
ENST00000679385
A0A7P0Z4L9
[Direct mapping] Membrane-spanning 4-domains subfamily A member 4A
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
164 aa
17.3 kDa
No 3
MS4A4A-209
ENSP00000505712
ENST00000679553
A0A7P0T9I4
[Direct mapping] Membrane-spanning 4-domains subfamily A member 4A
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
245 aa
26 kDa
No 4
MS4A4A-210
ENSP00000506432
ENST00000679988
A0A7P0Z4L9
[Direct mapping] Membrane-spanning 4-domains subfamily A member 4A
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
164 aa
17.3 kDa
No 3
MS4A4A-211
ENSP00000506147
ENST00000680301
A0A7P0TAE4
[Direct mapping] Membrane-spanning 4-domains subfamily A member 4A
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
240 aa
26.7 kDa
No 3
MS4A4A-212
ENSP00000506179
ENST00000680537
A0A384MDW1
[Direct mapping] Epididymis secretory sperm binding protein; Membrane-spanning 4-domains subfamily A member 4A; Membrane-spanning 4-domains, subfamily A, member 4, isoform CRA_c
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
220 aa
23.2 kDa
No 4
MS4A4A-214
ENSP00000505293
ENST00000680757
A0A384MDW1
[Direct mapping] Epididymis secretory sperm binding protein; Membrane-spanning 4-domains subfamily A member 4A; Membrane-spanning 4-domains, subfamily A, member 4, isoform CRA_c
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
220 aa
23.2 kDa
No 4
MS4A4A-215
ENSP00000505050
ENST00000680935
A0A7P0T8A0
[Direct mapping] Membrane-spanning 4-domains subfamily A member 4A
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
167 aa
17.5 kDa
No 3
MS4A4A-217
ENSP00000505714
ENST00000681288
A0A7P0T9I4
[Direct mapping] Membrane-spanning 4-domains subfamily A member 4A
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
245 aa
26 kDa
No 4
MS4A4A-218
ENSP00000505926
ENST00000681406
A0A7P0TA01
[Direct mapping] Membrane-spanning 4-domains subfamily A member 4A
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
192 aa
20.2 kDa
No 3

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