MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.0 nTPM
HPA Brain:50.7 nTPM
GTEx:9.0 nTPM
FANTOM5:111.1 Scaled Tags Per Million
Pig:43.5 nTPM
Mouse:41.7 nTPM
Allen mouse:3.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 50.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.9
2411 Female, age 72, unknown 52.0
2219 Male, age 76, both hemispheres 51.8
1870 Female, age 42, unknown 50.7
2019 Male, age 18, unknown 49.3
1833 Male, age 53, unknown 47.4
2666 Male, age 74, left hemisphere 47.2
1827 Male, age 72, unknown 47.1
1830 Male, age 51, unknown 45.5
2828 Female, age 72, unknown 41.5
2586 Male, age 75, left hemisphere 36.9
Dorsal raphe nucleus
nTPM: 44.5
2750 Male, age 76, both hemispheres 50.9
2298 Female, age 72, unknown 44.7
2047 Male, age 72, unknown 44.3
1828 Male, age 53, unknown 41.7
2016 Female, age 72, unknown 41.1
Inferior colliculus
nTPM: 42.9
2097 Female, age 72, unknown 45.6
1848 Female, age 42, unknown 43.1
1890 Male, age 53, unknown 42.3
2849 Male, age 72, unknown 40.5
Median raphe nucleus
nTPM: 50.7
2220 Male, age 76, midline 50.7
Periaquaductal grey, anterior
nTPM: 46.1
1947 Male, age 18, unknown 50.8
2502 Female, age 75, unknown 45.0
1795 Male, age 51, unknown 42.5
Periaquaductal grey, dorsal
nTPM: 41.4
2464 Female, age 72, unknown 44.8
2850 Male, age 76, both hemispheres 43.0
1840 Male, age 53, unknown 39.7
1831 Male, age 72, unknown 38.2
Periaquaductal grey, lateral
nTPM: 40.1
2272 Male, age 74, both hemispheres 41.3
2053 Male, age 18, unknown 39.7
2140 Male, age 76, both hemispheres 39.4
Pretectal area
nTPM: 46.7
1817 Female, age 42, unknown 54.9
2007 Male, age 72, unknown 53.0
1815 Male, age 53, unknown 52.4
1816 Male, age 51, unknown 51.3
1944 Female, age 72, unknown 48.5
2667 Female, age 75, unknown 46.5
2224 Female, age 72, unknown 45.1
2825 Male, age 18, unknown 42.8
2273 Male, age 74, both hemispheres 41.7
2407 Male, age 75, both hemispheres 39.1
2316 Male, age 76, right hemisphere 38.5
Red nucleus
nTPM: 47.6
1821 Female, age 72, unknown 56.6
1904 Male, age 53, unknown 51.2
1954 Female, age 42, unknown 50.0
2785 Male, age 18, unknown 49.6
1865 Male, age 51, unknown 48.3
2823 Male, age 76, right hemisphere 48.0
2503 Female, age 72, unknown 47.2
2588 Male, age 74, left hemisphere 46.8
2725 Female, age 75, unknown 46.1
2227 Male, age 72, unknown 45.5
2769 Male, age 72, unknown 44.3
2584 Male, age 75, left hemisphere 37.2
Substantia nigra
nTPM: 49.7
2241 Male, age 72, unknown 58.1
1916 Female, age 42, unknown 54.2
2409 Female, age 72, unknown 54.1
1889 Female, age 72, unknown 53.6
1851 Male, age 51, unknown 52.4
1941 Male, age 53, unknown 50.3
2583 Male, age 75, right hemisphere 44.8
2590 Female, age 75, unknown 44.4
2699 Male, age 18, unknown 43.8
2665 Male, age 74, both hemispheres 41.3
Superior colliculus
nTPM: 43.9
2668 Female, age 75, unknown 50.8
1895 Male, age 76, right hemisphere 46.9
1913 Female, age 42, unknown 46.4
1796 Male, age 53, unknown 45.0
2087 Female, age 72, unknown 44.2
2261 Male, age 18, unknown 44.2
1839 Male, age 51, unknown 43.6
2587 Male, age 74, left hemisphere 42.5
1995 Male, age 72, unknown 41.2
2664 Male, age 75, both hemispheres 34.2
Ventral tegmental area
nTPM: 47.6
2410 Female, age 72, unknown 57.9
2218 Male, age 76, both hemispheres 54.1
1915 Female, age 42, unknown 45.2
1942 Male, age 51, unknown 44.0
2223 Female, age 72, unknown 43.8
2021 Male, age 53, unknown 40.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.0
Samples: 139

Max nTPM: 18.6
Min nTPM: 4.2
Std nTPM: 2.4
Median nTPM: 8.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 18.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 18.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 15.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 14.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 14.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 14.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 14.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 13.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 13.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 13.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 12.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 111.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 111.1
FF:10158-103A5 76 years, female 111.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 43.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 41.1
Samples: 4

Max nTPM: 46.9
Min nTPM: 35.8
Sample A Female 46.9
Sample B Female 35.8
Sample C Male 44.4
Sample D Male 37.3
Midbrain
nTPM: 43.5
Samples: 4

Max nTPM: 52.7
Min nTPM: 33.8
Sample A Female 52.7
Sample B Female 37.4
Sample C Male 50.1
Sample D Male 33.8
Periaqueductal gray
nTPM: 33.7
Samples: 3

Max nTPM: 37.2
Min nTPM: 29.5
Sample B Female 34.3
Sample C Male 37.2
Sample D Male 29.5
Superior colliculi
nTPM: 41.4
Samples: 4

Max nTPM: 49.4
Min nTPM: 35.4
Sample A Female 42.4
Sample B Female 35.4
Sample C Male 49.4
Sample D Male 38.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 41.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.7
Samples: 4

Max nTPM: 45.5
Min nTPM: 33.4
Sample A Male 33.4
Sample B Male 45.5
Sample C Female 44.4
Sample D Female 43.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.7
68203459 Antisense, RP_041208_01_A06, Mouse strain C57BL/6J (56 days, male) 3.7

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