MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.5 nTPM
HPA Brain:71.4 nTPM
GTEx:16.5 nTPM
FANTOM5:64.4 Scaled Tags Per Million
Pig:20.7 nTPM
Mouse:9.0 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 71.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.9
2586 Male, age 75, left hemisphere 73.2
2666 Male, age 74, left hemisphere 72.0
2019 Male, age 18, unknown 71.3
1830 Male, age 51, unknown 64.4
1833 Male, age 53, unknown 63.6
2411 Female, age 72, unknown 62.6
1870 Female, age 42, unknown 59.6
2828 Female, age 72, unknown 59.1
1827 Male, age 72, unknown 48.8
2219 Male, age 76, both hemispheres 44.0
Dorsal raphe nucleus
nTPM: 37.8
2750 Male, age 76, both hemispheres 58.5
1828 Male, age 53, unknown 38.7
2016 Female, age 72, unknown 35.9
2047 Male, age 72, unknown 28.1
2298 Female, age 72, unknown 27.8
Inferior colliculus
nTPM: 41.6
1848 Female, age 42, unknown 45.0
2849 Male, age 72, unknown 45.0
1890 Male, age 53, unknown 42.8
2097 Female, age 72, unknown 33.6
Median raphe nucleus
nTPM: 33.0
2220 Male, age 76, midline 33.0
Periaquaductal grey, anterior
nTPM: 48.1
1947 Male, age 18, unknown 65.4
1795 Male, age 51, unknown 41.9
2502 Female, age 75, unknown 37.1
Periaquaductal grey, dorsal
nTPM: 29.5
2464 Female, age 72, unknown 42.1
1831 Male, age 72, unknown 28.3
1840 Male, age 53, unknown 25.1
2850 Male, age 76, both hemispheres 22.3
Periaquaductal grey, lateral
nTPM: 29.7
2272 Male, age 74, both hemispheres 33.0
2053 Male, age 18, unknown 31.7
2140 Male, age 76, both hemispheres 24.4
Pretectal area
nTPM: 45.3
2407 Male, age 75, both hemispheres 69.4
2007 Male, age 72, unknown 62.5
1815 Male, age 53, unknown 57.3
1817 Female, age 42, unknown 55.4
2316 Male, age 76, right hemisphere 52.5
2825 Male, age 18, unknown 41.9
1944 Female, age 72, unknown 36.2
1816 Male, age 51, unknown 35.9
2667 Female, age 75, unknown 31.9
2224 Female, age 72, unknown 29.9
2273 Male, age 74, both hemispheres 25.6
Red nucleus
nTPM: 71.4
1904 Male, age 53, unknown 83.7
2584 Male, age 75, left hemisphere 82.6
1865 Male, age 51, unknown 81.4
2785 Male, age 18, unknown 77.7
2769 Male, age 72, unknown 75.0
2588 Male, age 74, left hemisphere 74.6
2227 Male, age 72, unknown 70.8
1821 Female, age 72, unknown 68.1
1954 Female, age 42, unknown 64.0
2823 Male, age 76, right hemisphere 60.7
2725 Female, age 75, unknown 59.5
2503 Female, age 72, unknown 59.4
Substantia nigra
nTPM: 43.0
2583 Male, age 75, right hemisphere 73.5
2590 Female, age 75, unknown 56.1
1851 Male, age 51, unknown 46.5
1889 Female, age 72, unknown 44.9
2409 Female, age 72, unknown 39.2
1916 Female, age 42, unknown 36.3
2665 Male, age 74, both hemispheres 35.3
2241 Male, age 72, unknown 34.2
1941 Male, age 53, unknown 33.8
2699 Male, age 18, unknown 30.2
Superior colliculus
nTPM: 53.0
2668 Female, age 75, unknown 77.4
1995 Male, age 72, unknown 61.5
1913 Female, age 42, unknown 58.9
2664 Male, age 75, both hemispheres 57.3
1895 Male, age 76, right hemisphere 55.0
1839 Male, age 51, unknown 53.1
2587 Male, age 74, left hemisphere 48.9
1796 Male, age 53, unknown 46.5
2261 Male, age 18, unknown 38.0
2087 Female, age 72, unknown 33.6
Ventral tegmental area
nTPM: 44.6
2223 Female, age 72, unknown 63.4
2410 Female, age 72, unknown 54.6
1942 Male, age 51, unknown 41.8
2021 Male, age 53, unknown 37.6
2218 Male, age 76, both hemispheres 36.7
1915 Female, age 42, unknown 33.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.5
Samples: 139

Max nTPM: 62.5
Min nTPM: 4.3
Std nTPM: 8.2
Median nTPM: 14.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 62.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 53.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 40.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 38.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 37.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 36.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 32.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 27.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 27.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 26.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 26.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 64.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.4
FF:10158-103A5 76 years, female 64.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 20.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.2
Samples: 4

Max nTPM: 20.0
Min nTPM: 14.8
Sample A Female 20.0
Sample B Female 16.4
Sample C Male 17.5
Sample D Male 14.8
Midbrain
nTPM: 20.7
Samples: 4

Max nTPM: 26.8
Min nTPM: 15.7
Sample A Female 26.8
Sample B Female 17.0
Sample C Male 23.3
Sample D Male 15.7
Periaqueductal gray
nTPM: 17.7
Samples: 3

Max nTPM: 20.1
Min nTPM: 14.4
Sample B Female 18.7
Sample C Male 20.1
Sample D Male 14.4
Superior colliculi
nTPM: 17.4
Samples: 4

Max nTPM: 19.8
Min nTPM: 13.0
Sample A Female 18.9
Sample B Female 13.0
Sample C Male 19.8
Sample D Male 18.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.0
Samples: 4

Max nTPM: 9.8
Min nTPM: 8.3
Sample A Male 8.5
Sample B Male 8.3
Sample C Female 9.3
Sample D Female 9.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
74363351 Antisense, RP_051019_03_C08, Mouse strain C57BL/6J (56 days, male) 3.1
73424053 Antisense, RP_051019_03_C08, Mouse strain C57BL/6J (56 days, male) 2.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org