MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.2 nTPM
HPA Brain:115.8 nTPM
GTEx:26.2 nTPM
FANTOM5:10.2 Scaled Tags Per Million
Pig:44.1 nTPM
Mouse:41.4 nTPM
Allen mouse:8.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 115.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.4
2019 Male, age 18, unknown 110.4
1827 Male, age 72, unknown 107.6
2828 Female, age 72, unknown 104.5
2666 Male, age 74, left hemisphere 94.3
2586 Male, age 75, left hemisphere 74.3
2219 Male, age 76, both hemispheres 72.7
2411 Female, age 72, unknown 47.8
1833 Male, age 53, unknown 42.7
1870 Female, age 42, unknown 41.6
1830 Male, age 51, unknown 37.6
Dorsal raphe nucleus
nTPM: 55.1
2298 Female, age 72, unknown 76.5
1828 Male, age 53, unknown 56.6
2750 Male, age 76, both hemispheres 48.0
2016 Female, age 72, unknown 47.7
2047 Male, age 72, unknown 46.7
Inferior colliculus
nTPM: 56.3
2097 Female, age 72, unknown 64.8
1890 Male, age 53, unknown 55.0
1848 Female, age 42, unknown 54.3
2849 Male, age 72, unknown 51.2
Median raphe nucleus
nTPM: 60.7
2220 Male, age 76, midline 60.7
Periaquaductal grey, anterior
nTPM: 84.4
1795 Male, age 51, unknown 111.5
2502 Female, age 75, unknown 89.3
1947 Male, age 18, unknown 52.5
Periaquaductal grey, dorsal
nTPM: 80.4
2850 Male, age 76, both hemispheres 103.5
1831 Male, age 72, unknown 88.3
1840 Male, age 53, unknown 70.0
2464 Female, age 72, unknown 59.9
Periaquaductal grey, lateral
nTPM: 71.4
2140 Male, age 76, both hemispheres 84.4
2272 Male, age 74, both hemispheres 68.5
2053 Male, age 18, unknown 61.2
Pretectal area
nTPM: 115.8
1816 Male, age 51, unknown 215.7
1944 Female, age 72, unknown 210.2
2007 Male, age 72, unknown 176.7
1817 Female, age 42, unknown 167.1
1815 Male, age 53, unknown 150.5
2667 Female, age 75, unknown 82.6
2273 Male, age 74, both hemispheres 62.1
2224 Female, age 72, unknown 58.7
2316 Male, age 76, right hemisphere 51.4
2407 Male, age 75, both hemispheres 49.9
2825 Male, age 18, unknown 49.5
Red nucleus
nTPM: 51.4
2785 Male, age 18, unknown 119.7
2588 Male, age 74, left hemisphere 61.1
2584 Male, age 75, left hemisphere 60.3
2503 Female, age 72, unknown 50.0
1904 Male, age 53, unknown 43.3
1954 Female, age 42, unknown 43.3
2823 Male, age 76, right hemisphere 42.2
2725 Female, age 75, unknown 41.4
1821 Female, age 72, unknown 40.3
2769 Male, age 72, unknown 39.0
1865 Male, age 51, unknown 38.3
2227 Male, age 72, unknown 38.0
Substantia nigra
nTPM: 71.2
1889 Female, age 72, unknown 127.2
2665 Male, age 74, both hemispheres 115.2
1916 Female, age 42, unknown 85.2
1941 Male, age 53, unknown 80.6
1851 Male, age 51, unknown 73.8
2583 Male, age 75, right hemisphere 55.1
2590 Female, age 75, unknown 47.0
2699 Male, age 18, unknown 44.2
2241 Male, age 72, unknown 42.3
2409 Female, age 72, unknown 41.9
Superior colliculus
nTPM: 94.8
2087 Female, age 72, unknown 178.0
2668 Female, age 75, unknown 151.2
2261 Male, age 18, unknown 112.2
1796 Male, age 53, unknown 104.9
1913 Female, age 42, unknown 84.3
1995 Male, age 72, unknown 83.7
2664 Male, age 75, both hemispheres 78.4
1895 Male, age 76, right hemisphere 53.9
2587 Male, age 74, left hemisphere 53.0
1839 Male, age 51, unknown 48.8
Ventral tegmental area
nTPM: 56.0
2218 Male, age 76, both hemispheres 71.7
2410 Female, age 72, unknown 66.6
1942 Male, age 51, unknown 62.9
1915 Female, age 42, unknown 60.2
2021 Male, age 53, unknown 45.6
2223 Female, age 72, unknown 29.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 26.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.2
Samples: 139

Max nTPM: 86.8
Min nTPM: 2.5
Std nTPM: 17.2
Median nTPM: 21.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 86.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 72.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 69.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 68.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 65.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 65.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 63.5
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 60.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 58.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 56.1
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 56.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 10.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.2
FF:10158-103A5 76 years, female 10.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.2
Samples: 4

Max nTPM: 34.4
Min nTPM: 14.4
Sample A Female 30.6
Sample B Female 21.5
Sample C Male 34.4
Sample D Male 14.4
Midbrain
nTPM: 41.1
Samples: 4

Max nTPM: 83.1
Min nTPM: 15.1
Sample A Female 15.1
Sample B Female 25.0
Sample C Male 83.1
Sample D Male 41.3
Periaqueductal gray
nTPM: 26.0
Samples: 3

Max nTPM: 31.8
Min nTPM: 21.6
Sample B Female 24.7
Sample C Male 31.8
Sample D Male 21.6
Superior colliculi
nTPM: 44.2
Samples: 4

Max nTPM: 57.7
Min nTPM: 32.0
Sample A Female 32.0
Sample B Female 46.1
Sample C Male 57.7
Sample D Male 40.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 41.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.5
Samples: 4

Max nTPM: 46.9
Min nTPM: 35.8
Sample A Male 46.9
Sample B Male 35.8
Sample C Female 39.3
Sample D Female 43.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.6
68845371 Antisense, RP_050224_01_F08, Mouse strain C57BL/6J (56 days, male) 8.6

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