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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:640.2 nTPM
GTEx:640.2 nTPM
FANTOM5:281.3 Scaled Tags Per Million
Pig:85.6 nTPM
Mouse:487.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

640.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 640.2
Samples: 105

Max nTPM: 1228.6
Min nTPM: 429.6
Std nTPM: 116.8
Median nTPM:
491_1 89 years, female 1228.6
35_1 74 years, female 918.8
153_1 70 years, female 879.1
495_1 57 years, female 873.9
490_1 67 years, female 826.3
389_1 86 years, female 822.7
308_1 70 years, female 793.8
414_1 84 years, female 790.7
139_1 64 years, female 777.6
384_1 83 years, male 769.2
466_1 57 years, female 767.6
162_1 79 years, female 759.4
17_1 71 years, male 757.2
379_1 60 years, male 749.0
120_1 70 years, female 748.3
375_1 74 years, female 744.5
119_1 70 years, female 741.5
396_1 62 years, male 740.3
413_1 59 years, female 740.0
126_1 63 years, male 737.6
4_1 88 years, female 736.3
321_1 62 years, female 735.3
315_1 62 years, female 734.5
145_1 84 years, male 722.4
347_1 72 years, male 718.8
307_1 66 years, female 717.2
322_1 76 years, male 711.9
415_1 77 years, female 708.9
137_1 83 years, male 707.0
501_1 88 years, male 706.6
311_1 78 years, male 696.5
355_1 70 years, female 694.0
246_1 77 years, male 692.1
89_1 63 years, male 685.6
109_1 81 years, female 683.0
386_1 76 years, male 682.9
452_1 88 years, female 676.8
142_1 61 years, female 675.4
2_1 77 years, female 667.1
526_1 61 years, male 664.3
394_1 75 years, female 662.2
518_1 75 years, female 661.3
32_1 67 years, male 660.7
6_1 73 years, female 652.2
99_1 64 years, male 645.3
218_1 71 years, female 644.6
265_1 87 years, male 642.6
404_1 82 years, female 642.3
41_1 94 years, female 639.5
377_1 82 years, female 631.0
217_1 76 years, male 630.6
499_1 55 years, female 628.7
149_1 88 years, male 624.6
117_1 61 years, male 623.7
42_1 85 years, male 621.5
189_1 76 years, male 617.7
376_1 75 years, female 617.4
81_1 67 years, male 615.3
320_1 89 years, female 614.5
18_1 88 years, male 613.3
314_1 67 years, male 603.2
405_1 91 years, male 602.1
254_1 77 years, female 601.1
353_1 82 years, female 594.8
468_1 89 years, male 593.3
173_1 67 years, male 591.9
313_1 79 years, female 589.0
354_1 81 years, female 588.7
447_1 81 years, male 588.3
317_1 60 years, male 587.7
251_1 78 years, male 584.8
319_1 81 years, male 578.2
237_1 82 years, male 577.8
266_1 85 years, male 577.3
324_1 76 years, male 573.8
348_1 84 years, male 570.7
295_1 61 years, female 567.9
503_1 68 years, male 563.8
316_1 62 years, male 559.7
351_1 91 years, male 556.2
349_1 83 years, male 554.9
243_1 75 years, male 554.4
9_1 66 years, female 553.4
288_1 66 years, female 549.0
43_1 64 years, female 548.1
115_1 83 years, male 538.8
286_1 68 years, female 535.5
335_1 73 years, female 532.0
229_1 69 years, female 530.7
172_1 72 years, female 523.0
352_1 62 years, male 521.3
291_1 76 years, male 521.1
517_1 88 years, male 513.4
318_1 68 years, male 504.4
350_1 84 years, female 502.7
264_1 73 years, female 496.8
425_1 59 years, female 493.7
506_1 65 years, male 492.9
480_1 63 years, male 492.0
406_1 79 years, male 479.1
356_1 87 years, female 478.2
177_1 74 years, male 461.2
292_1 71 years, male 458.4
163_1 78 years, male 432.0
293_1 68 years, female 429.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

281.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 281.3
FF:10030-101E3 24-65 years, mixed 281.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.6
Pig sample Sample description nTPM
Retina
nTPM: 85.6
Samples: 4

Max nTPM: 111.8
Min nTPM: 60.9
Sample A Female 60.9
Sample B Female 86.3
Sample C Male 111.8
Sample D Male 83.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

487.7
Mouse sample Sample description nTPM
Retina
nTPM: 487.7
Samples: 4

Max nTPM: 719.4
Min nTPM: 383.2
Sample A Male 453.5
Sample B Male 383.2
Sample C Female 719.4
Sample D Female 394.6

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