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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:794.7 nTPM
HPA:742.9 nTPM
GTEx:794.7 nTPM
FANTOM5:501.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA005985
Glandular cells Not detected



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

742.9
overview
Male, age 65
Small intestine sample 232
nTPM: 914.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 728.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 665.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 662.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

794.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 794.7
Samples: 187

Max nTPM: 1750.3
Min nTPM: 363.4
Std nTPM: 228.9
Median nTPM: 776.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1750.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1620.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1516.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1488.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1324.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1282.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1252.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1227.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1215.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1199.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1178.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1161.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 1132.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1118.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1116.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1112.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1103.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1094.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1080.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1080.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1074.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1066.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1064.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1051.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1047.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1046.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1039.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1021.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1013.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 989.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 983.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 979.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 965.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 965.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 960.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 959.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 958.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 957.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 954.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 940.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 940.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 933.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 928.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 926.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 923.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 922.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 909.9
GTEX-1192X-2526-SM-59868 50-59 years, male 903.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 902.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 896.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 895.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 894.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 886.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 886.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 884.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 882.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 878.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 877.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 875.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 866.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 865.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 861.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 860.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 852.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 851.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 843.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 838.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 837.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 830.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 827.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 824.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 818.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 818.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 816.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 815.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 815.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 811.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 810.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 809.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 808.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 807.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 805.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 800.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 797.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 795.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 795.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 793.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 790.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 790.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 788.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 786.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 784.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 781.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 776.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 773.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 772.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 772.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 771.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 770.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 768.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 763.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 761.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 755.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 751.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 749.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 740.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 732.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 730.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 724.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 724.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 715.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 712.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 705.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 705.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 701.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 701.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 699.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 699.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 698.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 696.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 695.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 692.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 684.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 683.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 683.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 677.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 672.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 672.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 668.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 667.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 667.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 666.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 662.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 660.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 653.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 652.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 651.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 639.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 633.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 633.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 632.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 629.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 626.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 625.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 624.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 620.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 618.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 618.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 616.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 605.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 595.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 594.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 591.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 585.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 578.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 577.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 576.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 575.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 573.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 571.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 570.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 570.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 553.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 550.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 546.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 539.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 539.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 537.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 534.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 531.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 526.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 523.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 517.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 509.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 504.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 502.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 478.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 473.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 458.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 452.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 447.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 445.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 432.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 413.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 408.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 406.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 363.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

501.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 501.5
FF:10024-101D6 15,40,85 years, mixed 501.5

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