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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:47.9 nTPM
GTEx:47.9 nTPM
FANTOM5:187.8 Scaled Tags Per Million
Pig:56.2 nTPM
Mouse:163.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 47.9
Samples: 105

Max nTPM: 101.3
Min nTPM: 1.9
Std nTPM: 24.0
Median nTPM:
354_1 81 years, female 101.3
352_1 62 years, male 96.4
163_1 78 years, male 92.0
452_1 88 years, female 91.6
218_1 71 years, female 88.4
243_1 75 years, male 85.5
353_1 82 years, female 83.5
356_1 87 years, female 83.4
349_1 83 years, male 83.3
377_1 82 years, female 81.4
386_1 76 years, male 79.9
350_1 84 years, female 79.1
355_1 70 years, female 78.1
177_1 74 years, male 78.0
351_1 91 years, male 77.7
506_1 65 years, male 77.7
319_1 81 years, male 76.1
379_1 60 years, male 75.8
172_1 72 years, female 75.5
295_1 61 years, female 72.9
286_1 68 years, female 71.1
264_1 73 years, female 70.2
237_1 82 years, male 68.4
320_1 89 years, female 68.0
292_1 71 years, male 66.9
447_1 81 years, male 66.3
394_1 75 years, female 66.2
503_1 68 years, male 65.8
335_1 73 years, female 64.4
480_1 63 years, male 63.4
384_1 83 years, male 63.3
376_1 75 years, female 62.6
251_1 78 years, male 61.7
406_1 79 years, male 60.2
322_1 76 years, male 58.7
6_1 73 years, female 58.5
99_1 64 years, male 58.4
425_1 59 years, female 56.7
115_1 83 years, male 56.1
318_1 68 years, male 54.8
173_1 67 years, male 54.2
316_1 62 years, male 54.2
4_1 88 years, female 53.0
375_1 74 years, female 52.7
321_1 62 years, female 52.4
17_1 71 years, male 51.1
396_1 62 years, male 50.4
526_1 61 years, male 50.3
517_1 88 years, male 50.2
189_1 76 years, male 50.1
389_1 86 years, female 49.9
348_1 84 years, male 49.8
229_1 69 years, female 49.7
293_1 68 years, female 48.9
254_1 77 years, female 47.9
404_1 82 years, female 45.3
405_1 91 years, male 45.3
265_1 87 years, male 43.7
246_1 77 years, male 43.5
137_1 83 years, male 43.1
347_1 72 years, male 42.0
109_1 81 years, female 41.7
2_1 77 years, female 40.6
291_1 76 years, male 39.9
317_1 60 years, male 39.9
266_1 85 years, male 39.7
9_1 66 years, female 39.6
35_1 74 years, female 38.6
145_1 84 years, male 38.4
468_1 89 years, male 38.3
153_1 70 years, female 36.2
120_1 70 years, female 34.6
288_1 66 years, female 33.1
18_1 88 years, male 32.9
313_1 79 years, female 31.8
126_1 63 years, male 31.4
518_1 75 years, female 30.0
314_1 67 years, male 29.6
315_1 62 years, female 29.4
217_1 76 years, male 28.7
311_1 78 years, male 28.4
117_1 61 years, male 27.3
42_1 85 years, male 27.2
324_1 76 years, male 24.6
307_1 66 years, female 23.4
142_1 61 years, female 22.9
81_1 67 years, male 22.8
162_1 79 years, female 21.3
41_1 94 years, female 18.2
119_1 70 years, female 17.9
32_1 67 years, male 17.4
139_1 64 years, female 16.7
499_1 55 years, female 16.7
308_1 70 years, female 15.6
495_1 57 years, female 14.6
415_1 77 years, female 14.3
89_1 63 years, male 14.1
501_1 88 years, male 13.6
43_1 64 years, female 12.3
466_1 57 years, female 12.2
414_1 84 years, female 10.1
149_1 88 years, male 7.2
491_1 89 years, female 4.4
490_1 67 years, female 2.6
413_1 59 years, female 1.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

187.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 187.8
FF:10030-101E3 24-65 years, mixed 187.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56.2
Pig sample Sample description nTPM
Retina
nTPM: 56.3
Samples: 4

Max nTPM: 62.8
Min nTPM: 49.3
Sample A Female 54.0
Sample B Female 58.9
Sample C Male 62.8
Sample D Male 49.3

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

163.0
Mouse sample Sample description nTPM
Retina
nTPM: 163.0
Samples: 4

Max nTPM: 214.5
Min nTPM: 127.6
Sample A Male 162.6
Sample B Male 147.1
Sample C Female 214.5
Sample D Female 127.6

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