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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:243.2 nTPM
FANTOM5:343.3 Scaled Tags Per Million
Pig:80.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA031014
Glial cells Not detected
Neuronal cells High


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

243.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 243.2
Samples: 246

Max nTPM: 584.4
Min nTPM: 10.1
Std nTPM: 136.5
Median nTPM: 230.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 584.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 582.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 582.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 509.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 505.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 493.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 491.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 485.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 479.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 478.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 476.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 466.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 461.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 454.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 453.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 450.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 448.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 448.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 447.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 442.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 442.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 441.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 441.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 439.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 435.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 431.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 431.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 431.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 430.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 428.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 427.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 426.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 426.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 410.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 408.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 407.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 402.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 402.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 397.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 396.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 396.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 393.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 393.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 390.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 390.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 390.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 386.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 385.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 384.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 383.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 378.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 372.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 370.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 365.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 363.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 355.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 355.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 355.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 354.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 353.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 352.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 351.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 351.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 345.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 345.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 344.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 341.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 341.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 338.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 337.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 336.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 335.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 334.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 333.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 326.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 325.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 323.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 320.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 316.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 315.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 314.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 313.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 312.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 311.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 306.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 305.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 304.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 303.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 300.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 299.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 299.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 298.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 298.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 295.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 294.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 285.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 284.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 284.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 283.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 282.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 280.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 279.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 278.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 273.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 272.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 272.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 270.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 267.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 265.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 249.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 248.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 246.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 244.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 244.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 243.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 243.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 236.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 236.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 234.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 234.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 233.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 232.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 230.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 230.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 222.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 221.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 220.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 219.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 219.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 219.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 218.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 218.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 216.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 216.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 216.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 213.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 213.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 211.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 206.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 205.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 202.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 201.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 201.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 198.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 197.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 195.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 193.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 192.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 189.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 188.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 184.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 183.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 180.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 177.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 173.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 169.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 169.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 168.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 168.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 167.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 165.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 164.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 164.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 163.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 158.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 158.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 157.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 155.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 149.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 149.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 148.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 146.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 144.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 143.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 142.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 141.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 135.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 129.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 126.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 126.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 126.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 123.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 122.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 121.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 120.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 120.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 116.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 115.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 115.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 113.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 113.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 111.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 110.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 109.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 109.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 108.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 108.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 108.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 106.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 101.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 99.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 97.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 93.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 93.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 91.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 90.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 87.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 87.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 86.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 85.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 83.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 83.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 82.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 81.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 80.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 80.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 78.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 77.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 75.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 75.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 74.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 74.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 73.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 72.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 66.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 62.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 61.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 60.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 59.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 57.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 50.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 50.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 50.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 46.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 45.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 44.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 40.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 37.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 37.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 36.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 36.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 28.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 26.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 17.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 16.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 10.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

343.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 343.3
FF:10164-103B2 76 years, female 343.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.2
Pig sample Sample description nTPM
Caudate
nTPM: 80.2
Samples: 4

Max nTPM: 96.1
Min nTPM: 52.5
Sample A Female 52.5
Sample B Female 86.7
Sample C Male 96.1
Sample D Male 85.5

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