HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.3 nTPM
HPA Brain:38.6 nTPM
GTEx:23.3 nTPM
FANTOM5:28.9 Scaled Tags Per Million
Pig:18.8 nTPM
Mouse:19.3 nTPM
Allen mouse:9.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 38.6
Sample id Sample description nTPM
Hippocampus
nTPM: 34.0
2148 Female, age 91, left hemisphere 42.9
1855 Male, age 76, left hemisphere 34.9
2621 Female, age 67, right hemisphere 32.4
2529 Female, age 94, left hemisphere 31.7
1898 Male, age 80, left hemisphere 31.2
1911 Female, age 85, right hemisphere 30.6
Dentate gyrus
nTPM: 30.1
2530 Female, age 94, left hemisphere 34.0
2528 Male, age 74, both hemispheres 31.9
2246 Female, age 85, both hemispheres 30.8
1927 Female, age 91, both hemispheres 29.3
2531 Female, age 67, both hemispheres 29.0
2010 Male, age 76, both hemispheres 25.6
Entorhinal gyrus
nTPM: 38.6
2613 Female, age 94, left hemisphere 47.1
1787 Male, age 76, left hemisphere 40.3
1938 Female, age 85, left hemisphere 36.9
2117 Female, age 91, right hemisphere 36.4
2764 Male, age 80, right hemisphere 36.3
2686 Male, age 75, right hemisphere 34.5
Hippocampus, CA1
nTPM: 31.5
2527 Male, age 74, both hemispheres 39.4
2082 Female, age 91, right hemisphere 33.0
1873 Female, age 85, both hemispheres 30.2
2045 Male, age 76, both hemispheres 29.5
2749 Male, age 80, left hemisphere 25.6
Hippocampus, CA2
nTPM: 31.5
2437 Female, age 94, left hemisphere 38.5
1963 Male, age 80, left hemisphere 32.5
2113 Female, age 91, right hemisphere 31.6
1892 Male, age 76, both hemispheres 29.3
2249 Male, age 74, both hemispheres 29.0
1940 Female, age 85, left hemisphere 28.0
Hippocampus, CA3
nTPM: 30.8
2861 Female, age 67, both hemispheres 40.7
2620 Female, age 94, left hemisphere 36.4
1867 Male, age 76, both hemispheres 31.2
1891 Female, age 85, both hemispheres 31.2
2436 Male, age 74, both hemispheres 24.8
2137 Male, age 80, left hemisphere 20.7
Parahippocampal cortex
nTPM: 32.6
2692 Male, age 74, both hemispheres 40.0
2693 Female, age 94, both hemispheres 38.0
1990 Female, age 91, right hemisphere 34.9
2622 Female, age 67, right hemisphere 33.4
1933 Female, age 85, both hemispheres 33.2
2018 Male, age 76, both hemispheres 32.7
1850 Male, age 80, both hemispheres 31.1
2245 Female, age 91, both hemispheres 29.7
2250 Female, age 67, right hemisphere 29.5
2532 Female, age 72, left hemisphere 23.5
Perirhinal gyrus
nTPM: 32.7
2521 Female, age 94, right hemisphere 39.8
1847 Female, age 91, left hemisphere 37.8
1794 Male, age 80, right hemisphere 30.2
2848 Male, age 76, right hemisphere 29.4
1841 Female, age 85, right hemisphere 26.4
Subiculum
nTPM: 33.1
2729 Female, age 91, right hemisphere 38.6
2619 Male, age 74, both hemispheres 36.3
2438 Female, age 94, left hemisphere 36.0
1977 Female, age 85, both hemispheres 30.6
1901 Male, age 80, both hemispheres 29.7
2042 Male, age 76, both hemispheres 27.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 23.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 23.3
Samples: 197

Max nTPM: 48.7
Min nTPM: 5.3
Std nTPM: 6.9
Median nTPM: 22.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 48.7
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 41.2
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 40.6
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 39.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 36.3
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 36.2
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 35.9
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 35.9
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 35.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 35.4
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 34.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 28.9
FF:10153-102I9 76 years, female 35.9
FF:10169-103B7 60 years, female 21.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 18.8
Pig sample Sample description nTPM
Subiculum
nTPM: 18.1
Samples: 4

Max nTPM: 23.5
Min nTPM: 14.1
Sample A Female 23.5
Sample B Female 16.2
Sample C Male 18.5
Sample D Male 14.1
Dorsal hippocampus
nTPM: 18.4
Samples: 4

Max nTPM: 21.7
Min nTPM: 13.4
Sample A Female 20.7
Sample B Female 21.7
Sample C Male 17.7
Sample D Male 13.4
Entorhinal cortex
nTPM: 18.8
Samples: 4

Max nTPM: 21.2
Min nTPM: 15.2
Sample A Female 21.2
Sample B Female 15.2
Sample C Male 20.7
Sample D Male 18.0
Ventral hippocampus
nTPM: 18.2
Samples: 4

Max nTPM: 25.8
Min nTPM: 12.8
Sample A Female 12.8
Sample B Female 13.7
Sample C Male 20.6
Sample D Male 25.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 19.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 19.3
Samples: 4

Max nTPM: 24.3
Min nTPM: 16.9
Sample A Male 18.9
Sample B Male 17.2
Sample C Female 16.9
Sample D Female 24.3
Hippocampal formation
nTPM: 10.1
Samples: 4

Max nTPM: 11.1
Min nTPM: 9.4
Sample A Male 9.4
Sample B Male 9.7
Sample C Female 10.1
Sample D Female 11.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 9.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.1
71654154 Antisense, RP_050927_03_D10, Mouse strain C57BL/6J (56 days, male) 9.1

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