We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ATP5F1B
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • ATP5F1B
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:296.7 nTPM
FANTOM5:238.7 Scaled Tags Per Million
Pig:0.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001520Antibody HPA001528Antibody CAB017527
Glial cells Not detectedMediumNot detected
Neuronal cells MediumMediumLow







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

296.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 296.7
Samples: 246

Max nTPM: 571.2
Min nTPM: 120.4
Std nTPM: 81.8
Median nTPM: 289.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 571.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 545.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 544.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 529.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 499.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 490.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 485.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 483.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 464.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 463.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 463.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 457.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 456.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 448.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 445.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 443.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 442.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 438.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 438.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 435.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 434.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 427.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 421.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 418.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 417.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 413.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 413.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 411.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 404.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 396.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 392.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 387.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 384.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 383.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 378.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 377.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 377.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 375.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 368.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 367.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 366.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 364.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 363.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 362.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 360.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 359.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 359.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 357.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 357.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 356.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 356.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 355.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 354.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 353.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 353.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 350.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 350.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 349.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 347.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 345.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 341.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 339.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 338.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 337.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 336.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 335.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 335.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 335.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 334.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 333.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 333.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 332.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 332.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 331.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 327.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 326.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 324.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 324.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 322.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 322.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 321.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 320.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 318.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 315.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 315.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 315.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 315.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 313.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 311.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 310.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 310.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 308.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 308.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 308.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 307.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 307.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 306.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 305.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 305.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 304.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 301.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 301.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 300.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 300.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 299.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 299.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 297.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 296.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 296.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 295.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 295.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 294.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 294.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 294.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 294.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 293.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 293.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 292.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 292.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 292.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 291.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 290.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 290.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 288.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 288.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 287.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 286.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 286.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 286.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 286.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 285.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 285.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 284.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 283.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 282.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 281.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 281.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 280.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 275.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 272.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 272.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 271.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 269.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 267.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 266.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 265.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 264.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 263.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 262.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 262.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 262.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 262.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 261.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 261.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 261.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 260.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 259.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 258.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 257.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 255.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 255.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 254.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 254.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 254.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 253.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 253.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 252.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 250.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 249.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 248.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 245.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 244.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 242.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 242.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 242.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 242.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 242.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 241.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 240.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 239.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 239.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 237.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 237.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 235.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 234.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 234.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 234.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 233.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 233.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 232.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 231.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 231.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 230.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 230.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 230.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 230.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 229.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 227.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 225.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 225.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 224.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 223.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 222.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 221.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 220.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 218.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 218.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 218.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 217.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 216.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 215.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 211.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 211.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 210.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 210.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 208.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 208.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 206.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 204.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 202.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 202.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 201.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 201.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 200.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 199.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 198.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 197.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 196.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 196.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 195.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 194.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 193.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 187.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 184.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 183.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 182.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 179.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 179.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 177.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 176.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 174.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 155.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 148.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 147.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 140.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 120.4
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

238.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 238.7
FF:10164-103B2 76 years, female 238.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Pig sample Sample description nTPM
Caudate
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org