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ATP5F1B
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  • ATP5F1B
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:559.4 nTPM
HPA:559.4 nTPM
GTEx:405.0 nTPM
FANTOM5:809.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001520Antibody HPA001528Antibody CAB017527
Glandular cells MediumMediumHigh




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

559.4
overview
Male, age 65
Small intestine sample 232
nTPM: 612.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 568.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 478.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 578.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

405.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 405.0
Samples: 187

Max nTPM: 1117.3
Min nTPM: 101.9
Std nTPM: 171.2
Median nTPM: 371.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1117.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 846.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 812.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 805.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 796.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 791.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 763.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 730.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 705.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 704.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 692.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 690.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 672.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 654.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 651.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 650.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 648.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 647.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 646.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 645.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 638.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 626.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 624.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 622.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 620.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 618.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 612.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 609.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 606.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 602.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 602.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 593.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 581.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 572.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 566.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 564.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 560.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 558.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 553.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 548.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 547.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 546.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 546.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 540.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 538.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 534.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 524.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 518.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 515.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 513.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 498.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 493.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 492.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 484.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 479.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 476.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 471.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 471.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 469.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 469.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 468.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 464.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 448.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 444.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 443.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 439.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 438.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 436.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 432.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 431.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 425.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 423.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 419.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 418.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 416.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 416.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 411.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 411.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 407.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 407.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 407.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 402.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 399.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 398.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 397.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 392.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 391.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 390.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 389.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 387.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 381.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 380.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 376.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 371.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 370.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 367.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 366.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 361.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 358.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 355.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 355.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 355.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 354.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 351.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 350.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 349.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 347.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 340.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 339.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 336.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 336.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 336.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 336.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 335.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 332.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 329.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 329.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 324.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 323.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 323.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 321.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 320.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 316.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 315.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 313.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 309.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 309.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 300.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 300.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 299.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 297.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 286.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 284.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 281.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 280.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 280.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 276.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 275.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 273.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 273.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 272.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 267.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 265.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 263.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 263.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 254.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 254.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 252.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 252.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 249.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 249.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 248.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 246.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 245.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 242.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 238.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 238.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 235.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 233.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 230.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 221.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 220.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 218.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 216.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 215.2
GTEX-1192X-2526-SM-59868 50-59 years, male 214.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 214.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 213.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 211.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 207.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 202.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 197.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 196.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 194.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 187.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 183.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 181.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 181.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 180.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 177.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 171.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 164.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 164.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 159.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 156.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 138.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 101.9
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

809.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 809.2
FF:10024-101D6 15,40,85 years, mixed 809.2

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