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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:152.5 nTPM
HPA Brain:147.7 nTPM
GTEx:152.5 nTPM
FANTOM5:401.0 Scaled Tags Per Million
Pig:168.1 nTPM
Mouse:89.5 nTPM
Allen mouse:11.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.7
Sample id Sample description nTPM
Amygdala
nTPM: 147.7
2514 Male, age 75, right hemisphere 162.7
2695 Female, age 67, right hemisphere 156.8
2517 Female, age 94, left hemisphere 142.2
2814 Male, age 76, right hemisphere 141.7
1987 Female, age 91, left hemisphere 135.3
Basal amygdala
nTPM: 116.5
2609 Male, age 75, right hemisphere 139.5
2110 Male, age 80, left hemisphere 125.7
2243 Female, age 91, right hemisphere 116.8
1955 Male, age 76, both hemispheres 113.8
2685 Female, age 94, left hemisphere 102.2
2827 Female, age 67, right hemisphere 100.9
Central amygdala
nTPM: 125.1
2826 Female, age 94, left hemisphere 133.3
2515 Male, age 75, right hemisphere 131.9
2239 Male, age 80, left hemisphere 125.4
1905 Male, age 76, both hemispheres 123.4
2701 Female, age 91, right hemisphere 111.6
Corticomedial amygdala
nTPM: 119.8
2428 Male, age 75, right hemisphere 129.6
2240 Male, age 76, both hemispheres 127.4
2829 Male, age 80, left hemisphere 120.0
2242 Female, age 91, right hemisphere 119.3
2429 Female, age 94, left hemisphere 114.6
2535 Female, age 67, right hemisphere 108.2
Lateral amygdala
nTPM: 117.9
2516 Male, age 75, right hemisphere 142.8
1883 Male, age 76, both hemispheres 134.2
2534 Female, age 94, left hemisphere 127.0
2256 Male, age 80, left hemisphere 107.3
2830 Female, age 67, right hemisphere 106.2
2255 Female, age 91, right hemisphere 89.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 152.5
Samples: 152

Max nTPM: 501.4
Min nTPM: 96.9
Std nTPM: 59.4
Median nTPM: 139.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 501.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 483.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 419.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 375.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 252.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 248.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 244.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 238.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 236.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 226.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 224.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 223.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 216.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 214.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 212.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 206.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 204.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 193.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 193.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 192.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 189.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 188.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 185.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 177.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 174.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 174.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 173.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 173.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 172.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 171.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 169.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 169.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 168.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 166.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 164.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 162.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 162.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 161.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 161.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 160.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 160.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 160.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 160.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 159.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 159.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 159.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 159.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 158.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 154.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 153.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 152.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 152.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 150.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 148.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 148.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 148.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 148.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 147.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 147.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 146.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 146.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 145.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 145.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 145.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 145.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 144.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 144.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 142.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 142.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 141.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 141.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 141.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 141.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 140.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 140.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 139.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 139.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 139.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 139.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 138.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 137.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 136.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 136.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 135.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 135.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 134.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 132.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 132.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 132.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 130.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 129.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 129.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 128.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 128.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 127.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 127.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 127.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 127.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 127.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 126.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 126.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 126.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 126.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 125.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 124.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 124.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 123.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 123.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 122.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 121.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 121.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 121.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 121.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 121.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 120.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 120.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 120.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 119.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 119.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 119.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 118.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 118.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 117.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 116.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 115.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 115.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 115.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 114.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 113.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 113.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 113.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 113.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 112.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 112.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 109.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 108.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 108.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 107.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 105.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 104.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 104.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 102.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 102.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 102.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 101.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 99.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 99.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 97.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 97.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 97.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 96.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 96.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

401.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 401.0
FF:10151-102I7 76 years, female 401.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.1
Pig sample Sample description nTPM
Amygdala
nTPM: 168.1
Samples: 4

Max nTPM: 211.8
Min nTPM: 141.7
Sample A Female 211.8
Sample B Female 177.0
Sample C Male 141.9
Sample D Male 141.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 89.5
Samples: 4

Max nTPM: 94.3
Min nTPM: 85.5
Sample A Male 88.6
Sample B Male 85.5
Sample C Female 89.6
Sample D Female 94.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

11.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.0
75214937 Antisense, RP_060427_01_A04, Mouse strain C57BL/6J (56 days, male) 11.0

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