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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:175.6 nTPM
HPA Brain:70.6 nTPM
GTEx:175.6 nTPM
FANTOM5:197.9 Scaled Tags Per Million
Pig:97.6 nTPM
Mouse:301.2 nTPM
Allen mouse:22.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.6
Sample id Sample description nTPM
Amygdala
nTPM: 68.8
2514 Male, age 75, right hemisphere 78.7
1987 Female, age 91, left hemisphere 73.6
2695 Female, age 67, right hemisphere 68.6
2814 Male, age 76, right hemisphere 68.4
2517 Female, age 94, left hemisphere 54.4
Basal amygdala
nTPM: 59.3
2243 Female, age 91, right hemisphere 76.5
1955 Male, age 76, both hemispheres 66.2
2110 Male, age 80, left hemisphere 65.5
2609 Male, age 75, right hemisphere 54.1
2685 Female, age 94, left hemisphere 52.8
2827 Female, age 67, right hemisphere 40.3
Central amygdala
nTPM: 59.8
2239 Male, age 80, left hemisphere 69.1
2701 Female, age 91, right hemisphere 61.0
1905 Male, age 76, both hemispheres 60.6
2515 Male, age 75, right hemisphere 54.2
2826 Female, age 94, left hemisphere 54.2
Corticomedial amygdala
nTPM: 70.6
2242 Female, age 91, right hemisphere 82.6
2429 Female, age 94, left hemisphere 74.8
2240 Male, age 76, both hemispheres 73.4
2829 Male, age 80, left hemisphere 72.5
2428 Male, age 75, right hemisphere 65.9
2535 Female, age 67, right hemisphere 54.4
Lateral amygdala
nTPM: 52.4
1883 Male, age 76, both hemispheres 65.7
2534 Female, age 94, left hemisphere 55.3
2516 Male, age 75, right hemisphere 55.2
2256 Male, age 80, left hemisphere 54.5
2255 Female, age 91, right hemisphere 46.7
2830 Female, age 67, right hemisphere 37.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

175.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 175.6
Samples: 152

Max nTPM: 398.5
Min nTPM: 98.9
Std nTPM: 45.1
Median nTPM: 172.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 398.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 356.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 295.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 287.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 284.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 275.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 261.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 257.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 257.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 257.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 244.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 241.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 238.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 235.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 227.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 225.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 222.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 218.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 218.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 213.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 212.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 211.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 208.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 206.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 206.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 206.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 204.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 204.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 203.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 202.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 201.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 200.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 199.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 199.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 198.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 197.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 197.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 197.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 196.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 196.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 194.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 193.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 192.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 190.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 189.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 188.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 188.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 186.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 185.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 185.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 185.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 184.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 184.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 184.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 183.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 182.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 181.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 181.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 181.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 181.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 180.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 179.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 178.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 178.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 177.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 177.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 177.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 177.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 176.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 175.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 175.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 174.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 174.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 174.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 172.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 172.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 172.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 171.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 169.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 168.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 168.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 168.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 167.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 166.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 165.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 165.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 165.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 164.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 163.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 163.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 163.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 162.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 162.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 158.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 157.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 156.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 155.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 155.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 154.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 153.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 153.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 152.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 151.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 151.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 150.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 150.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 150.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 149.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 147.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 147.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 145.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 144.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 143.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 142.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 142.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 142.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 141.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 140.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 139.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 139.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 139.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 139.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 138.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 138.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 137.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 137.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 136.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 136.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 135.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 134.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 133.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 133.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 132.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 131.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 129.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 127.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 127.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 126.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 124.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 123.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 121.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 120.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 120.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 119.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 117.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 116.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 113.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 112.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 110.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 110.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 104.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 98.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

197.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 197.9
FF:10151-102I7 76 years, female 197.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.6
Pig sample Sample description nTPM
Amygdala
nTPM: 97.6
Samples: 4

Max nTPM: 130.6
Min nTPM: 78.5
Sample A Female 130.6
Sample B Female 102.7
Sample C Male 78.5
Sample D Male 78.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

301.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 301.2
Samples: 4

Max nTPM: 326.4
Min nTPM: 285.1
Sample A Male 298.9
Sample B Male 326.4
Sample C Female 294.4
Sample D Female 285.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.4
68193057 Antisense, RP_040826_01_F03, Mouse strain C57BL/6J (56 days, male) 22.4

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