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SCNN1A
HPA
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  • SCNN1A
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SCNN1A
Synonyms ENaCalpha, SCNN1
Gene descriptioni

Full gene name according to HGNC.

Sodium channel epithelial 1 subunit alpha
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
FDA approved drug targets
Human disease related genes
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 12
Cytoband p13.31
Chromosome location (bp) 6346843 - 6377730
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

6
Ensembl ENSG00000111319 (version 109)
Entrez gene 6337
HGNC HGNC:10599
UniProt P37088 (UniProt - Evidence at protein level)
neXtProt NX_P37088
GeneCards SCNN1A
Antibodypedia SCNN1A antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Sodium permeable non-voltage-sensitive ion channel inhibited by the diuretic amiloride. Mediates the electrodiffusion of the luminal sodium (and water, which follows osmotically) through the apical membrane of epithelial cells. Plays an essential role in electrolyte and blood pressure homeostasis, but also in airway surface liquid homeostasis, which is important for proper clearance of mucus. Controls the reabsorption of sodium in kidney, colon, lung and eccrine sweat glands. Also plays a role in taste perception.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Ion channel, Sodium channel
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Ion transport, Sensory transduction, Sodium transport, Taste, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Sodium
Gene summary (Entrez)i

Useful information about the gene from Entrez

Nonvoltage-gated, amiloride-sensitive, sodium channels control fluid and electrolyte transport across epithelia in many organs. These channels are heteromeric complexes consisting of 3 subunits: alpha, beta, and gamma. This gene encodes the alpha subunit, and mutations in this gene have been associated with pseudohypoaldosteronism type 1 (PHA1), a rare salt wasting disease resulting from target organ unresponsiveness to mineralocorticoids. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Apr 2009]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SCNN1A-201
ENSP00000228916
ENST00000228916
P37088
[Direct mapping] Amiloride-sensitive sodium channel subunit alpha
Show all
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Cardiovascular diseases
   Hypertensive diseases
   Respiratory diseases
   Tracheobronchial diseases
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0001669 [acrosomal vesicle]
GO:0005272 [sodium channel activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0005929 [cilium]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006883 [cellular sodium ion homeostasis]
GO:0008217 [regulation of blood pressure]
GO:0009897 [external side of plasma membrane]
GO:0015280 [ligand-gated sodium channel activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016324 [apical plasma membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0031514 [motile cilium]
GO:0034706 [sodium channel complex]
GO:0035725 [sodium ion transmembrane transport]
GO:0036254 [cellular response to amiloride]
GO:0042995 [cell projection]
GO:0050699 [WW domain binding]
GO:0050891 [multicellular organismal water homeostasis]
GO:0050896 [response to stimulus]
GO:0050909 [sensory perception of taste]
GO:0050914 [sensory perception of salty taste]
GO:0050915 [sensory perception of sour taste]
GO:0055078 [sodium ion homeostasis]
GO:0060170 [ciliary membrane]
GO:0070062 [extracellular exosome]
GO:0071468 [cellular response to acidic pH]
GO:0097228 [sperm principal piece]
GO:0098662 [inorganic cation transmembrane transport]
GO:0098719 [sodium ion import across plasma membrane]
GO:1904045 [cellular response to aldosterone]
GO:1904117 [cellular response to vasopressin]
Show all
669 aa
75.7 kDa
No 2
SCNN1A-203
ENSP00000353292
ENST00000360168
P37088
[Direct mapping] Amiloride-sensitive sodium channel subunit alpha
Show all
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Cardiovascular diseases
   Hypertensive diseases
   Respiratory diseases
   Tracheobronchial diseases
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0001669 [acrosomal vesicle]
GO:0005272 [sodium channel activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0005929 [cilium]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006883 [cellular sodium ion homeostasis]
GO:0008217 [regulation of blood pressure]
GO:0015280 [ligand-gated sodium channel activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016324 [apical plasma membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0031514 [motile cilium]
GO:0034706 [sodium channel complex]
GO:0035725 [sodium ion transmembrane transport]
GO:0036254 [cellular response to amiloride]
GO:0042995 [cell projection]
GO:0050699 [WW domain binding]
GO:0050891 [multicellular organismal water homeostasis]
GO:0050896 [response to stimulus]
GO:0050909 [sensory perception of taste]
GO:0050914 [sensory perception of salty taste]
GO:0050915 [sensory perception of sour taste]
GO:0055078 [sodium ion homeostasis]
GO:0060170 [ciliary membrane]
GO:0070062 [extracellular exosome]
GO:0071468 [cellular response to acidic pH]
GO:0097228 [sperm principal piece]
GO:0098662 [inorganic cation transmembrane transport]
GO:0098719 [sodium ion import across plasma membrane]
GO:1904045 [cellular response to aldosterone]
GO:1904117 [cellular response to vasopressin]
Show all
728 aa
81.9 kDa
No 2
SCNN1A-205
ENSP00000380166
ENST00000396966
J3KPV6
[Direct mapping] Amiloride-sensitive sodium channel subunit alpha
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Cardiovascular diseases
   Hypertensive diseases
   Respiratory diseases
   Tracheobronchial diseases
   Urinary system diseases
   Kidney diseases
   DeepTMHMM predicted membrane proteins
Show all
GO:0005272 [sodium channel activity]
GO:0006814 [sodium ion transport]
GO:0015280 [ligand-gated sodium channel activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0035725 [sodium ion transmembrane transport]
GO:0050915 [sensory perception of sour taste]
GO:0098662 [inorganic cation transmembrane transport]
Show all
511 aa
59 kDa
No 1
SCNN1A-210
ENSP00000443434
ENST00000536788
F5H5F8
[Direct mapping] Amiloride-sensitive sodium channel subunit alpha
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Cardiovascular diseases
   Hypertensive diseases
   Respiratory diseases
   Tracheobronchial diseases
   Urinary system diseases
   Kidney diseases
   DeepTMHMM predicted membrane proteins
Show all
GO:0005272 [sodium channel activity]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0016020 [membrane]
GO:0035725 [sodium ion transmembrane transport]
Show all
159 aa
18.1 kDa
No 1
SCNN1A-215
ENSP00000440876
ENST00000540037
F5GXE6
[Direct mapping] Amiloride-sensitive sodium channel subunit alpha
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Cardiovascular diseases
   Hypertensive diseases
   Respiratory diseases
   Tracheobronchial diseases
   Urinary system diseases
   Kidney diseases
   DeepTMHMM predicted membrane proteins
Show all
GO:0005272 [sodium channel activity]
GO:0006814 [sodium ion transport]
GO:0015280 [ligand-gated sodium channel activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0035725 [sodium ion transmembrane transport]
GO:0050915 [sensory perception of sour taste]
GO:0098662 [inorganic cation transmembrane transport]
Show all
369 aa
40.9 kDa
No 1
SCNN1A-221
ENSP00000438739
ENST00000543768
P37088
[Direct mapping] Amiloride-sensitive sodium channel subunit alpha
Show all
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Cardiovascular diseases
   Hypertensive diseases
   Respiratory diseases
   Tracheobronchial diseases
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0001669 [acrosomal vesicle]
GO:0005272 [sodium channel activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0005929 [cilium]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006883 [cellular sodium ion homeostasis]
GO:0008217 [regulation of blood pressure]
GO:0015280 [ligand-gated sodium channel activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016324 [apical plasma membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0031514 [motile cilium]
GO:0034706 [sodium channel complex]
GO:0035725 [sodium ion transmembrane transport]
GO:0036254 [cellular response to amiloride]
GO:0042995 [cell projection]
GO:0050699 [WW domain binding]
GO:0050891 [multicellular organismal water homeostasis]
GO:0050896 [response to stimulus]
GO:0050909 [sensory perception of taste]
GO:0050914 [sensory perception of salty taste]
GO:0050915 [sensory perception of sour taste]
GO:0055078 [sodium ion homeostasis]
GO:0060170 [ciliary membrane]
GO:0070062 [extracellular exosome]
GO:0071468 [cellular response to acidic pH]
GO:0097228 [sperm principal piece]
GO:0098662 [inorganic cation transmembrane transport]
GO:0098719 [sodium ion import across plasma membrane]
GO:1904045 [cellular response to aldosterone]
GO:1904117 [cellular response to vasopressin]
Show all
692 aa
78.2 kDa
No 2

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