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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CARTILAGE CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:794.0 nTPM
HPA:141.2 nTPM
GTEx:794.0 nTPM
FANTOM5:476.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA013949
Glandular cells Not detected



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.2
overview
Male, age 65
Small intestine sample 232
nTPM: 41.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 166.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 176.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 180.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

794.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 794.0
Samples: 187

Max nTPM: 4994.1
Min nTPM: 46.0
Std nTPM: 959.0
Median nTPM: 354.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 4994.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 4382.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 4200.4
GTEX-1192X-2526-SM-59868 50-59 years, male 3983.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 3580.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 3403.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 3118.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 3094.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 2828.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 2695.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 2691.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2678.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 2575.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 2559.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 2531.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2487.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 2421.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 2410.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2302.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 2302.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2292.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2222.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 2082.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 2013.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1952.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1919.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1857.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1830.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1796.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1789.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1772.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1617.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1614.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1554.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1512.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1469.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1434.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1433.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1314.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1218.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1207.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1180.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1172.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1137.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 991.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 972.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 936.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 913.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 913.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 872.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 872.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 837.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 824.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 798.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 795.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 790.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 782.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 736.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 701.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 696.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 685.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 677.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 653.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 589.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 588.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 551.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 550.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 535.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 514.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 486.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 479.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 474.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 470.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 469.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 459.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 455.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 449.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 442.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 439.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 433.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 431.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 430.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 423.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 405.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 404.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 398.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 393.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 381.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 381.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 372.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 362.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 361.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 355.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 354.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 354.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 351.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 347.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 345.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 344.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 341.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 338.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 331.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 329.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 325.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 321.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 320.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 311.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 301.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 299.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 298.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 295.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 293.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 291.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 286.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 286.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 282.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 262.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 257.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 245.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 240.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 236.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 235.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 234.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 233.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 231.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 230.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 226.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 224.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 223.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 223.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 220.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 219.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 214.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 209.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 205.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 200.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 198.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 197.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 196.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 194.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 193.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 193.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 192.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 184.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 182.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 178.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 177.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 176.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 174.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 171.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 166.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 166.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 164.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 163.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 161.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 159.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 156.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 155.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 155.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 147.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 142.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 142.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 139.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 139.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 134.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 130.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 129.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 128.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 128.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 126.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 124.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 123.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 111.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 108.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 108.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 97.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 89.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 86.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 85.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 77.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 67.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 67.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 61.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 57.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 57.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 53.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 46.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

476.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 476.6
FF:10024-101D6 15,40,85 years, mixed 476.6

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