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RFC5
HPA
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  • SUMMARY

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  • BRAIN

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  • RFC5
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

RFC5
Synonyms RFC36
Gene descriptioni

Full gene name according to HGNC.

Replication factor C subunit 5
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Metabolic proteins
Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 12
Cytoband q24.23
Chromosome location (bp) 118013588 - 118033130
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

7
Ensembl ENSG00000111445 (version 109)
Entrez gene 5985
HGNC HGNC:9973
UniProt P40937 (UniProt - Evidence at protein level)
neXtProt NX_P40937
GeneCards RFC5
Antibodypedia RFC5 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

DNA replication
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

ATP-binding, Nucleotide-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes the smallest subunit of the replication factor C complex, which consists of five distinct subunits (140, 40, 38, 37, and 36 kDa) and is required for DNA replication. This subunit interacts with the C-terminal region of proliferating cell nuclear antigen and is required to open and load proliferating cell nuclear antigen onto DNA during S phase. It is a member of the AAA+ (ATPases associated with various cellular activities) ATPase family and forms a core complex with the 38 and 40 kDa subunits that possesses DNA-dependent ATPase activity. A related pseudogene has been identified on chromosome 9. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2016]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
RFC5-201
ENSP00000376325
ENST00000392542
P40937
[Direct mapping] Replication factor C subunit 5
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0003677 [DNA binding]
GO:0003689 [DNA clamp loader activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005663 [DNA replication factor C complex]
GO:0006260 [DNA replication]
GO:0006261 [DNA-templated DNA replication]
GO:0006281 [DNA repair]
GO:0016887 [ATP hydrolysis activity]
GO:0017116 [single-stranded DNA helicase activity]
GO:0019899 [enzyme binding]
GO:0031390 [Ctf18 RFC-like complex]
GO:0032508 [DNA duplex unwinding]
GO:1900264 [positive regulation of DNA-directed DNA polymerase activity]
Show all
319 aa
36.1 kDa
No 0
RFC5-202
ENSP00000390340
ENST00000420967
C9JH72
[Direct mapping] Replication factor C subunit 5
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
104 aa
11.7 kDa
No 0
RFC5-203
ENSP00000393636
ENST00000449641
E9PEP3
[Direct mapping] Replication factor C subunit 5
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
99 aa
11.3 kDa
No 0
RFC5-204
ENSP00000408295
ENST00000454402
P40937
[Direct mapping] Replication factor C subunit 5
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0003677 [DNA binding]
GO:0003689 [DNA clamp loader activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005663 [DNA replication factor C complex]
GO:0006260 [DNA replication]
GO:0006261 [DNA-templated DNA replication]
GO:0006281 [DNA repair]
GO:0016887 [ATP hydrolysis activity]
GO:0017116 [single-stranded DNA helicase activity]
GO:0019899 [enzyme binding]
GO:0031390 [Ctf18 RFC-like complex]
GO:0032508 [DNA duplex unwinding]
GO:1900264 [positive regulation of DNA-directed DNA polymerase activity]
Show all
340 aa
38.5 kDa
No 0
RFC5-206
ENSP00000445917
ENST00000484086
F5H0U6
[Direct mapping] Replication factor C subunit 5
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
139 aa
15.3 kDa
No 0
RFC5-207
ENSP00000438252
ENST00000535092
F5H304
[Direct mapping] Replication factor C subunit 5
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
63 aa
7.2 kDa
No 0
RFC5-208
ENSP00000443187
ENST00000537315
F5H5S0
[Direct mapping] Replication factor C subunit 5
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
104 aa
11.9 kDa
No 0

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