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CNOT2
HPA
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  • CNOT2
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

CNOT2
Synonyms CDC36, NOT2, NOT2H
Gene descriptioni

Full gene name according to HGNC.

CCR4-NOT transcription complex subunit 2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 12
Cytoband q15
Chromosome location (bp) 70243002 - 70354993
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

19
Ensembl ENSG00000111596 (version 109)
Entrez gene 4848
HGNC HGNC:7878
UniProt Q9NZN8 (UniProt - Evidence at protein level)
neXtProt NX_Q9NZN8
GeneCards CNOT2
Antibodypedia CNOT2 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Component of the CCR4-NOT complex which is one of the major cellular mRNA deadenylases and is linked to various cellular processes including bulk mRNA degradation, miRNA-mediated repression, translational repression during translational initiation and general transcription regulation. Additional complex functions may be a consequence of its influence on mRNA expression. Required for the CCR4-NOT complex structural integrity. Can repress transcription and may link the CCR4-NOT complex to transcriptional regulation; the repressive function may specifically involve the N-Cor repressor complex containing HDAC3, NCOR1 and NCOR2. Involved in the maintenance of embryonic stem (ES) cell identity.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Developmental protein, Repressor
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

RNA-mediated gene silencing, Transcription, Transcription regulation, Translation regulation
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a subunit of the multi-component CCR4-NOT complex. The CCR4-NOT complex regulates mRNA synthesis and degradation and is also thought to be involved in mRNA splicing, transport and localization. The encoded protein interacts with histone deacetylases and functions as a repressor of polymerase II transcription. Alternatively spliced transcript variants have been observed for this gene. [provided by RefSeq, Dec 2010]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
CNOT2-201
ENSP00000229195
ENST00000229195
Q9NZN8
[Direct mapping] CCR4-NOT transcription complex subunit 2
Show all
A0A024RBD8
[Target identity:100%; Query identity:100%] CCR4-NOT transcription complex, subunit 2, isoform CRA_c; CCR4-NOT transcription complex, subunit 2, isoform CRA_d
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000289 [nuclear-transcribed mRNA poly(A) tail shortening]
GO:0000932 [P-body]
GO:0001222 [transcription corepressor binding]
GO:0001829 [trophectodermal cell differentiation]
GO:0003712 [transcription coregulator activity]
GO:0004535 [poly(A)-specific ribonuclease activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006351 [DNA-templated transcription]
GO:0006355 [regulation of DNA-templated transcription]
GO:0006357 [regulation of transcription by RNA polymerase II]
GO:0006417 [regulation of translation]
GO:0010606 [positive regulation of cytoplasmic mRNA processing body assembly]
GO:0016020 [membrane]
GO:0030014 [CCR4-NOT complex]
GO:0030015 [CCR4-NOT core complex]
GO:0031047 [gene silencing by RNA]
GO:0033147 [negative regulation of intracellular estrogen receptor signaling pathway]
GO:0090503 [RNA phosphodiester bond hydrolysis, exonucleolytic]
GO:2000036 [regulation of stem cell population maintenance]
Show all
540 aa
59.7 kDa
No 0
CNOT2-202
ENSP00000412091
ENST00000418359
Q9NZN8
[Direct mapping] CCR4-NOT transcription complex subunit 2
Show all
A0A024RBD8
[Target identity:100%; Query identity:100%] CCR4-NOT transcription complex, subunit 2, isoform CRA_c; CCR4-NOT transcription complex, subunit 2, isoform CRA_d
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000289 [nuclear-transcribed mRNA poly(A) tail shortening]
GO:0000932 [P-body]
GO:0001222 [transcription corepressor binding]
GO:0003712 [transcription coregulator activity]
GO:0004535 [poly(A)-specific ribonuclease activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006351 [DNA-templated transcription]
GO:0006355 [regulation of DNA-templated transcription]
GO:0006357 [regulation of transcription by RNA polymerase II]
GO:0006417 [regulation of translation]
GO:0010606 [positive regulation of cytoplasmic mRNA processing body assembly]
GO:0016020 [membrane]
GO:0030014 [CCR4-NOT complex]
GO:0030015 [CCR4-NOT core complex]
GO:0031047 [gene silencing by RNA]
GO:0033147 [negative regulation of intracellular estrogen receptor signaling pathway]
GO:0090503 [RNA phosphodiester bond hydrolysis, exonucleolytic]
GO:2000036 [regulation of stem cell population maintenance]
Show all
540 aa
59.7 kDa
No 0
CNOT2-206
ENSP00000450283
ENST00000547780
F8VPX5
[Direct mapping] CCR4-NOT transcription complex subunit 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
25 aa
2.8 kDa
No 0
CNOT2-207
ENSP00000448660
ENST00000547867
F8VRJ3
[Direct mapping] CCR4-NOT transcription complex subunit 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
68 aa
7.6 kDa
No 0
CNOT2-209
ENSP00000449659
ENST00000548159
F8VV52
[Direct mapping] CCR4-NOT transcription complex subunit 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006355 [regulation of DNA-templated transcription]
GO:0030015 [CCR4-NOT core complex]
Show all
531 aa
58.6 kDa
No 0
CNOT2-211
ENSP00000448808
ENST00000548338
H0YI80
[Direct mapping] CCR4-NOT transcription complex subunit 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006355 [regulation of DNA-templated transcription]
GO:0030015 [CCR4-NOT core complex]
Show all
99 aa
11 kDa
No 0
CNOT2-220
ENSP00000449577
ENST00000549750
F8VVY1
[Direct mapping] CCR4-NOT transcription complex subunit 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0030015 [CCR4-NOT core complex]
Show all
182 aa
19.7 kDa
No 0
CNOT2-223
ENSP00000448490
ENST00000550160
F8VRS8
[Direct mapping] CCR4-NOT transcription complex subunit 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0030015 [CCR4-NOT core complex]
Show all
276 aa
29.9 kDa
No 0
CNOT2-224
ENSP00000449446
ENST00000550194
F8VX63
[Direct mapping] CCR4-NOT transcription complex subunit 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0030015 [CCR4-NOT core complex]
Show all
217 aa
23.5 kDa
No 0
CNOT2-225
ENSP00000448024
ENST00000550641
F8VUB4
[Direct mapping] CCR4-NOT transcription complex subunit 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006355 [regulation of DNA-templated transcription]
GO:0030015 [CCR4-NOT core complex]
Show all
520 aa
57.4 kDa
No 0
CNOT2-227
ENSP00000449260
ENST00000551043
Q9NZN8
[Direct mapping] CCR4-NOT transcription complex subunit 2
Show all
A0A024RBD8
[Target identity:100%; Query identity:100%] CCR4-NOT transcription complex, subunit 2, isoform CRA_c; CCR4-NOT transcription complex, subunit 2, isoform CRA_d
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000289 [nuclear-transcribed mRNA poly(A) tail shortening]
GO:0000932 [P-body]
GO:0001222 [transcription corepressor binding]
GO:0003712 [transcription coregulator activity]
GO:0004535 [poly(A)-specific ribonuclease activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006351 [DNA-templated transcription]
GO:0006355 [regulation of DNA-templated transcription]
GO:0006357 [regulation of transcription by RNA polymerase II]
GO:0006417 [regulation of translation]
GO:0010606 [positive regulation of cytoplasmic mRNA processing body assembly]
GO:0016020 [membrane]
GO:0030014 [CCR4-NOT complex]
GO:0030015 [CCR4-NOT core complex]
GO:0031047 [gene silencing by RNA]
GO:0033147 [negative regulation of intracellular estrogen receptor signaling pathway]
GO:0090503 [RNA phosphodiester bond hydrolysis, exonucleolytic]
GO:2000036 [regulation of stem cell population maintenance]
Show all
540 aa
59.7 kDa
No 0
CNOT2-228
ENSP00000449801
ENST00000551132
F8VWH8
[Direct mapping] CCR4-NOT transcription complex subunit 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
81 aa
9 kDa
No 0
CNOT2-231
ENSP00000448883
ENST00000551483
Q9NZN8
[Direct mapping] CCR4-NOT transcription complex subunit 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000289 [nuclear-transcribed mRNA poly(A) tail shortening]
GO:0000932 [P-body]
GO:0001222 [transcription corepressor binding]
GO:0003712 [transcription coregulator activity]
GO:0004535 [poly(A)-specific ribonuclease activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006351 [DNA-templated transcription]
GO:0006355 [regulation of DNA-templated transcription]
GO:0006357 [regulation of transcription by RNA polymerase II]
GO:0006417 [regulation of translation]
GO:0010606 [positive regulation of cytoplasmic mRNA processing body assembly]
GO:0016020 [membrane]
GO:0030014 [CCR4-NOT complex]
GO:0030015 [CCR4-NOT core complex]
GO:0031047 [gene silencing by RNA]
GO:0033147 [negative regulation of intracellular estrogen receptor signaling pathway]
GO:0090503 [RNA phosphodiester bond hydrolysis, exonucleolytic]
GO:2000036 [regulation of stem cell population maintenance]
Show all
191 aa
22.3 kDa
No 0
CNOT2-233
ENSP00000447808
ENST00000551710
H0YHT6
[Direct mapping] CCR4-NOT transcription complex subunit 2
Show all
   Phobius predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006355 [regulation of DNA-templated transcription]
GO:0030015 [CCR4-NOT core complex]
Show all
104 aa
12.5 kDa
No 0
CNOT2-234
ENSP00000450090
ENST00000551873
F8VQD8
[Direct mapping] CCR4-NOT transcription complex subunit 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0030015 [CCR4-NOT core complex]
Show all
131 aa
14 kDa
No 0
CNOT2-235
ENSP00000483096
ENST00000552151
A0A087X050
[Direct mapping] CCR4-NOT transcription complex subunit 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0030015 [CCR4-NOT core complex]
Show all
152 aa
16.2 kDa
No 0
CNOT2-238
ENSP00000450077
ENST00000552483
F8VQF4
[Direct mapping] CCR4-NOT transcription complex subunit 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0030015 [CCR4-NOT core complex]
Show all
144 aa
15.7 kDa
No 0
CNOT2-239
ENSP00000446507
ENST00000552599
H0YH84
[Direct mapping] CCR4-NOT transcription complex subunit 2
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006355 [regulation of DNA-templated transcription]
GO:0030015 [CCR4-NOT core complex]
Show all
186 aa
20.2 kDa
No 0
CNOT2-240
ENSP00000447497
ENST00000552915
F8W145
[Direct mapping] CCR4-NOT transcription complex subunit 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0030015 [CCR4-NOT core complex]
Show all
309 aa
33.3 kDa
No 0

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