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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:413.5 nTPM
GTEx:413.5 nTPM
FANTOM5:93.9 Scaled Tags Per Million
Pig:334.4 nTPM
Mouse:277.3 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

413.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 413.5
Samples: 105

Max nTPM: 1554.0
Min nTPM: 62.7
Std nTPM: 219.9
Median nTPM:
218_1 71 years, female 1554.0
447_1 81 years, male 1171.5
347_1 72 years, male 945.6
350_1 84 years, female 794.3
386_1 76 years, male 759.2
6_1 73 years, female 750.5
384_1 83 years, male 723.6
379_1 60 years, male 671.7
322_1 76 years, male 662.4
41_1 94 years, female 655.2
173_1 67 years, male 652.2
237_1 82 years, male 649.1
319_1 81 years, male 648.7
293_1 68 years, female 641.8
317_1 60 years, male 635.9
321_1 62 years, female 623.2
375_1 74 years, female 615.1
307_1 66 years, female 583.8
163_1 78 years, male 574.1
351_1 91 years, male 571.3
145_1 84 years, male 564.6
349_1 83 years, male 556.1
316_1 62 years, male 553.4
177_1 74 years, male 519.6
243_1 75 years, male 512.3
4_1 88 years, female 511.0
348_1 84 years, male 508.3
353_1 82 years, female 497.1
352_1 62 years, male 488.8
389_1 86 years, female 482.8
42_1 85 years, male 478.9
2_1 77 years, female 471.9
320_1 89 years, female 471.2
35_1 74 years, female 468.1
311_1 78 years, male 460.8
354_1 81 years, female 460.2
291_1 76 years, male 459.0
376_1 75 years, female 456.6
452_1 88 years, female 441.1
172_1 72 years, female 440.3
356_1 87 years, female 437.7
377_1 82 years, female 437.1
318_1 68 years, male 426.8
406_1 79 years, male 422.9
292_1 71 years, male 422.1
99_1 64 years, male 420.2
506_1 65 years, male 417.7
189_1 76 years, male 406.5
480_1 63 years, male 393.8
251_1 78 years, male 392.8
517_1 88 years, male 389.0
264_1 73 years, female 388.0
117_1 61 years, male 379.2
313_1 79 years, female 376.8
115_1 83 years, male 376.7
335_1 73 years, female 370.1
295_1 61 years, female 362.2
503_1 68 years, male 360.7
425_1 59 years, female 357.3
396_1 62 years, male 354.7
394_1 75 years, female 346.1
526_1 61 years, male 340.5
324_1 76 years, male 340.0
119_1 70 years, female 338.6
495_1 57 years, female 337.5
405_1 91 years, male 336.4
17_1 71 years, male 331.6
153_1 70 years, female 328.7
139_1 64 years, female 326.7
18_1 88 years, male 325.3
355_1 70 years, female 323.7
314_1 67 years, male 320.3
137_1 83 years, male 314.4
468_1 89 years, male 314.2
246_1 77 years, male 313.4
286_1 68 years, female 298.4
120_1 70 years, female 293.6
9_1 66 years, female 292.6
254_1 77 years, female 292.4
404_1 82 years, female 285.6
499_1 55 years, female 282.3
126_1 63 years, male 278.2
265_1 87 years, male 265.6
518_1 75 years, female 264.4
308_1 70 years, female 264.0
229_1 69 years, female 221.6
315_1 62 years, female 205.0
288_1 66 years, female 193.0
89_1 63 years, male 192.9
217_1 76 years, male 187.2
81_1 67 years, male 186.4
43_1 64 years, female 185.5
109_1 81 years, female 185.5
266_1 85 years, male 181.3
142_1 61 years, female 172.8
490_1 67 years, female 169.5
162_1 79 years, female 130.8
32_1 67 years, male 129.8
501_1 88 years, male 127.5
415_1 77 years, female 126.5
466_1 57 years, female 122.3
149_1 88 years, male 103.7
491_1 89 years, female 103.5
414_1 84 years, female 99.3
413_1 59 years, female 62.7
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

93.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 93.9
FF:10030-101E3 24-65 years, mixed 93.9

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

334.4
Pig sample Sample description nTPM
Retina
nTPM: 334.4
Samples: 4

Max nTPM: 377.4
Min nTPM: 296.1
Sample A Female 348.5
Sample B Female 296.1
Sample C Male 377.4
Sample D Male 315.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

277.3
Mouse sample Sample description nTPM
Retina
nTPM: 277.3
Samples: 4

Max nTPM: 327.4
Min nTPM: 232.1
Sample A Male 327.4
Sample B Male 278.0
Sample C Female 271.7
Sample D Female 232.1

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