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GNPTAB
HPA
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  • GNPTAB
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

GNPTAB
Synonyms GNPTA, KIAA1208, MGC4170
Gene descriptioni

Full gene name according to HGNC.

N-acetylglucosamine-1-phosphate transferase subunits alpha and beta
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Cancer-related genes
Disease related genes
Enzymes
Human disease related genes
Metabolic proteins
Potential drug targets
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 12
Cytoband q23.2
Chromosome location (bp) 101745499 - 101830959
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

6
Ensembl ENSG00000111670 (version 109)
Entrez gene 79158
HGNC HGNC:29670
UniProt Q3T906 (UniProt - Evidence at protein level)
neXtProt NX_Q3T906
GeneCards GNPTAB
Antibodypedia GNPTAB antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Catalyzes the formation of mannose 6-phosphate (M6P) markers on high mannose type oligosaccharides in the Golgi apparatus. M6P residues are required to bind to the M6P receptors (MPR), which mediate the vesicular transport of lysosomal enzymes to the endosomal/prelysosomal compartment.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Transferase
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Calcium, Metal-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes two of three subunit types of the membrane-bound enzyme N-acetylglucosamine-1-phosphotransferase, a heterohexameric complex composed of two alpha, two beta, and two gamma subunits. The encoded protein is proteolytically cleaved at the Lys928-Asp929 bond to yield mature alpha and beta polypeptides while the gamma subunits are the product of a distinct gene (GeneID 84572). In the Golgi apparatus, the heterohexameric complex catalyzes the first step in the synthesis of mannose 6-phosphate recognition markers on certain oligosaccharides of newly synthesized lysosomal enzymes. These recognition markers are essential for appropriate trafficking of lysosomal enzymes. Mutations in this gene have been associated with both mucolipidosis II and mucolipidosis IIIA.[provided by RefSeq, May 2010]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
GNPTAB-201
ENSP00000299314
ENST00000299314
Q3T906
[Direct mapping] N-acetylglucosamine-1-phosphotransferase subunits alpha/beta N-acetylglucosamine-1-phosphotransferase subunit alpha N-acetylglucosamine-1-phosphotransferase subunit beta
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Cancer-related genes
   Mutated cancer genes
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of glycan/glycoprotein metabolism
   Lysosomal storage diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0003976 [UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity]
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0005794 [Golgi apparatus]
GO:0007040 [lysosome organization]
GO:0009306 [protein secretion]
GO:0016020 [membrane]
GO:0016256 [N-glycan processing to lysosome]
GO:0016740 [transferase activity]
GO:0016772 [transferase activity, transferring phosphorus-containing groups]
GO:0033299 [secretion of lysosomal enzymes]
GO:0046835 [carbohydrate phosphorylation]
GO:0046872 [metal ion binding]
GO:0051649 [establishment of localization in cell]
Show all
1256 aa
143.6 kDa
No 2
GNPTAB-202
ENSP00000376651
ENST00000392919
Q9BUA5
[Direct mapping] GNPTAB protein; N-acetylglucosamine-1-phosphotransferase subunits alpha/beta
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Cancer-related genes
   Mutated cancer genes
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of glycan/glycoprotein metabolism
   Lysosomal storage diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
Show all
71 aa
8.4 kDa
No 1
GNPTAB-203
ENSP00000450413
ENST00000549165
F8VQW2
[Direct mapping] N-acetylglucosamine-1-phosphotransferase subunits alpha/beta
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Cancer-related genes
   Mutated cancer genes
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of glycan/glycoprotein metabolism
   Lysosomal storage diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
Show all
68 aa
8.1 kDa
No 1
GNPTAB-206
ENSP00000449150
ENST00000549940
Q3T906
[Direct mapping] N-acetylglucosamine-1-phosphotransferase subunits alpha/beta N-acetylglucosamine-1-phosphotransferase subunit alpha N-acetylglucosamine-1-phosphotransferase subunit beta
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Cancer-related genes
   Mutated cancer genes
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of glycan/glycoprotein metabolism
   Lysosomal storage diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0003976 [UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity]
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0005794 [Golgi apparatus]
GO:0007040 [lysosome organization]
GO:0016020 [membrane]
GO:0016256 [N-glycan processing to lysosome]
GO:0016740 [transferase activity]
GO:0016772 [transferase activity, transferring phosphorus-containing groups]
GO:0046835 [carbohydrate phosphorylation]
GO:0046872 [metal ion binding]
Show all
490 aa
56 kDa
No 1
GNPTAB-208
ENSP00000449557
ENST00000550718
H0YIK3
[Direct mapping] N-acetylglucosamine-1-phosphotransferase subunits alpha/beta
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutated cancer genes
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of glycan/glycoprotein metabolism
   Lysosomal storage diseases
Protein evidence (Ezkurdia et al 2014)
Show all
117 aa
13.2 kDa
No 0
GNPTAB-210
ENSP00000449217
ENST00000552681
H0YIE6
[Direct mapping] N-acetylglucosamine-1-phosphotransferase subunits alpha/beta
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutated cancer genes
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of glycan/glycoprotein metabolism
   Lysosomal storage diseases
Protein evidence (Ezkurdia et al 2014)
Show all
138 aa
15.3 kDa
No 0

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