MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.6 nTPM
HPA Brain:222.4 nTPM
GTEx:77.6 nTPM
FANTOM5:139.1 Scaled Tags Per Million
Pig:112.1 nTPM
Mouse:31.1 nTPM
Allen mouse:11.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 222.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 204.8
2586 Male, age 75, left hemisphere 303.2
2666 Male, age 74, left hemisphere 248.2
2828 Female, age 72, unknown 241.2
1827 Male, age 72, unknown 209.3
2219 Male, age 76, both hemispheres 204.7
1833 Male, age 53, unknown 197.7
1870 Female, age 42, unknown 181.1
1830 Male, age 51, unknown 178.9
2019 Male, age 18, unknown 144.5
2411 Female, age 72, unknown 139.4
Dorsal raphe nucleus
nTPM: 158.1
1828 Male, age 53, unknown 185.5
2016 Female, age 72, unknown 167.6
2047 Male, age 72, unknown 163.8
2750 Male, age 76, both hemispheres 137.5
2298 Female, age 72, unknown 136.0
Inferior colliculus
nTPM: 208.7
2849 Male, age 72, unknown 295.5
1848 Female, age 42, unknown 202.8
1890 Male, age 53, unknown 184.2
2097 Female, age 72, unknown 152.1
Median raphe nucleus
nTPM: 187.8
2220 Male, age 76, midline 187.8
Periaquaductal grey, anterior
nTPM: 214.1
1947 Male, age 18, unknown 224.2
1795 Male, age 51, unknown 215.4
2502 Female, age 75, unknown 202.7
Periaquaductal grey, dorsal
nTPM: 222.4
2850 Male, age 76, both hemispheres 301.6
1840 Male, age 53, unknown 209.2
1831 Male, age 72, unknown 193.6
2464 Female, age 72, unknown 185.3
Periaquaductal grey, lateral
nTPM: 204.6
2140 Male, age 76, both hemispheres 253.7
2053 Male, age 18, unknown 190.3
2272 Male, age 74, both hemispheres 169.7
Pretectal area
nTPM: 193.7
2407 Male, age 75, both hemispheres 229.9
2825 Male, age 18, unknown 225.7
1816 Male, age 51, unknown 211.7
1817 Female, age 42, unknown 206.4
1815 Male, age 53, unknown 196.3
2667 Female, age 75, unknown 193.4
1944 Female, age 72, unknown 183.3
2007 Male, age 72, unknown 179.9
2316 Male, age 76, right hemisphere 174.7
2224 Female, age 72, unknown 169.1
2273 Male, age 74, both hemispheres 160.4
Red nucleus
nTPM: 178.9
2584 Male, age 75, left hemisphere 205.8
2725 Female, age 75, unknown 199.5
2588 Male, age 74, left hemisphere 196.8
2769 Male, age 72, unknown 191.9
2227 Male, age 72, unknown 188.5
2823 Male, age 76, right hemisphere 184.0
2503 Female, age 72, unknown 171.3
1954 Female, age 42, unknown 170.0
1865 Male, age 51, unknown 167.6
2785 Male, age 18, unknown 162.4
1904 Male, age 53, unknown 156.9
1821 Female, age 72, unknown 152.0
Substantia nigra
nTPM: 170.2
2699 Male, age 18, unknown 223.7
2665 Male, age 74, both hemispheres 207.4
1916 Female, age 42, unknown 188.0
2583 Male, age 75, right hemisphere 178.3
1941 Male, age 53, unknown 170.0
1851 Male, age 51, unknown 166.3
1889 Female, age 72, unknown 164.7
2590 Female, age 75, unknown 155.2
2241 Male, age 72, unknown 125.1
2409 Female, age 72, unknown 123.6
Superior colliculus
nTPM: 199.8
2664 Male, age 75, both hemispheres 310.5
1796 Male, age 53, unknown 207.5
1839 Male, age 51, unknown 206.2
2668 Female, age 75, unknown 199.2
2261 Male, age 18, unknown 192.3
2587 Male, age 74, left hemisphere 179.8
1913 Female, age 42, unknown 178.7
2087 Female, age 72, unknown 177.7
1995 Male, age 72, unknown 174.3
1895 Male, age 76, right hemisphere 172.3
Ventral tegmental area
nTPM: 166.2
2223 Female, age 72, unknown 176.4
2218 Male, age 76, both hemispheres 172.4
1942 Male, age 51, unknown 170.6
2021 Male, age 53, unknown 168.8
1915 Female, age 42, unknown 168.1
2410 Female, age 72, unknown 140.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 77.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.6
Samples: 139

Max nTPM: 156.7
Min nTPM: 47.8
Std nTPM: 16.7
Median nTPM: 75.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 156.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 129.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 123.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 123.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 120.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 113.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 106.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 106.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 106.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 104.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 99.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 139.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 139.1
FF:10158-103A5 76 years, female 139.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 112.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 83.6
Samples: 4

Max nTPM: 99.3
Min nTPM: 73.8
Sample A Female 82.3
Sample B Female 73.8
Sample C Male 99.3
Sample D Male 78.9
Midbrain
nTPM: 106.5
Samples: 4

Max nTPM: 139.0
Min nTPM: 82.1
Sample A Female 84.2
Sample B Female 82.1
Sample C Male 139.0
Sample D Male 120.8
Periaqueductal gray
nTPM: 90.1
Samples: 3

Max nTPM: 99.5
Min nTPM: 84.3
Sample B Female 84.3
Sample C Male 99.5
Sample D Male 86.5
Superior colliculi
nTPM: 112.1
Samples: 4

Max nTPM: 141.1
Min nTPM: 73.7
Sample A Female 112.7
Sample B Female 73.7
Sample C Male 120.9
Sample D Male 141.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 31.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.1
Samples: 4

Max nTPM: 34.9
Min nTPM: 28.2
Sample A Male 34.9
Sample B Male 28.2
Sample C Female 30.1
Sample D Female 31.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 11.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.1
68911027 Antisense, RP_050203_02_G07, Mouse strain C57BL/6J (56 days, male) 11.1

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