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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Gradient: Descending
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:166.3 nTPM
HPA:64.3 nTPM
GTEx:166.3 nTPM
FANTOM5:110.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA019007Antibody CAB004641
Endocrine cells -Medium
Enterocytes -Medium
Enterocytes - Gradient -Descending
Enterocytes - Microvilli -Not detected
Glandular cells Not detected-
Goblet cells -Not detected
Paneth cells -Not detected




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.3
overview
Male, age 65
Small intestine sample 232
nTPM: 63.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 65.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 73.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 54.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

166.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 166.3
Samples: 187

Max nTPM: 1046.4
Min nTPM: 22.9
Std nTPM: 114.8
Median nTPM: 147.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1046.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 457.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 437.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 416.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 411.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 400.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 388.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 381.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 371.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 369.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 369.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 355.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 341.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 333.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 329.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 308.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 306.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 306.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 303.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 300.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 299.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 294.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 292.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 280.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 277.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 266.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 260.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 256.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 251.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 250.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 249.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 247.7
GTEX-1192X-2526-SM-59868 50-59 years, male 246.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 246.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 245.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 245.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 244.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 237.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 236.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 234.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 234.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 230.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 228.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 227.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 226.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 222.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 221.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 219.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 215.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 213.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 212.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 211.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 209.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 202.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 200.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 200.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 199.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 197.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 196.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 196.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 193.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 189.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 189.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 188.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 184.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 183.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 179.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 176.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 176.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 175.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 175.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 168.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 165.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 164.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 164.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 163.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 163.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 163.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 162.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 162.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 162.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 159.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 158.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 157.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 154.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 154.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 151.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 151.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 150.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 149.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 149.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 149.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 147.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 147.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 145.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 144.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 143.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 143.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 142.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 141.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 141.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 139.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 139.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 137.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 137.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 136.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 134.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 133.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 133.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 131.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 129.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 128.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 127.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 125.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 124.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 124.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 123.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 120.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 115.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 114.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 113.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 112.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 110.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 109.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 109.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 108.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 106.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 104.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 98.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 94.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 92.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 89.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 88.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 86.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 85.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 84.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 83.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 82.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 80.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 79.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 79.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 78.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 77.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 77.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 75.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 74.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 74.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 71.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 68.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 68.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 67.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 66.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 66.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 65.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 63.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 63.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 62.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 61.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 61.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 61.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 60.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 60.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 58.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 57.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 57.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 57.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 57.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 54.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 54.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 54.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 52.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 52.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 51.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 49.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 49.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 48.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 48.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 48.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 48.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 45.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 45.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 41.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 41.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 41.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 39.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 38.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 22.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

110.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 110.8
FF:10024-101D6 15,40,85 years, mixed 110.8

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