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COX6A1
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  • COX6A1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:822.2 nTPM
FANTOM5:431.3 Scaled Tags Per Million
Pig:85.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA062394
Glial cells Low
Neuronal cells High


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

822.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 822.2
Samples: 246

Max nTPM: 2511.9
Min nTPM: 361.2
Std nTPM: 273.6
Median nTPM: 775.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 2511.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2227.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 2053.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2039.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1664.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1644.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1561.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1452.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1395.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1280.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1261.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1257.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 1254.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1241.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1212.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1187.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1179.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1161.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1140.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1128.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1101.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1091.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1079.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1079.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1073.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1066.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1054.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1051.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1049.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1049.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 1047.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1022.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1020.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1015.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1006.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1005.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1001.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 995.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 995.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 992.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 984.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 979.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 972.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 971.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 970.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 968.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 967.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 966.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 964.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 964.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 955.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 951.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 949.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 947.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 946.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 942.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 939.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 929.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 925.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 923.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 917.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 912.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 908.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 906.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 900.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 899.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 898.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 887.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 884.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 881.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 880.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 878.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 878.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 874.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 873.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 871.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 871.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 868.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 867.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 864.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 861.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 859.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 856.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 856.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 852.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 850.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 849.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 849.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 842.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 839.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 839.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 833.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 831.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 829.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 828.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 827.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 826.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 825.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 824.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 823.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 819.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 816.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 816.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 815.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 813.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 812.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 811.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 809.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 808.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 806.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 799.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 798.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 795.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 788.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 785.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 784.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 782.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 781.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 781.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 780.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 777.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 777.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 776.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 774.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 770.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 768.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 768.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 766.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 764.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 762.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 762.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 759.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 758.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 758.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 756.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 755.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 753.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 752.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 752.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 752.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 747.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 746.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 746.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 745.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 745.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 742.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 741.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 741.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 737.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 736.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 733.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 729.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 728.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 726.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 724.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 718.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 715.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 712.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 707.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 704.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 704.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 702.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 699.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 699.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 698.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 697.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 696.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 696.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 695.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 692.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 692.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 689.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 687.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 681.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 680.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 679.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 678.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 678.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 674.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 674.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 668.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 665.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 663.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 662.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 661.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 659.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 658.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 656.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 655.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 650.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 650.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 644.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 643.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 640.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 640.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 639.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 637.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 636.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 635.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 629.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 629.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 628.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 627.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 624.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 620.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 614.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 612.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 610.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 608.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 607.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 604.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 602.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 601.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 596.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 595.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 593.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 593.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 592.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 591.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 589.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 572.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 571.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 568.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 560.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 559.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 556.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 553.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 544.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 530.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 527.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 523.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 517.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 511.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 510.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 501.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 498.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 497.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 490.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 489.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 476.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 464.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 451.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 442.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 430.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 404.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 361.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

431.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 431.3
FF:10164-103B2 76 years, female 431.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.7
Pig sample Sample description nTPM
Caudate
nTPM: 85.7
Samples: 4

Max nTPM: 104.3
Min nTPM: 71.5
Sample A Female 77.1
Sample B Female 90.0
Sample C Male 104.3
Sample D Male 71.5

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