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COX6A1
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  • COX6A1
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:467.2 nTPM
HPA:467.2 nTPM
GTEx:414.9 nTPM
FANTOM5:625.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA062394
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

467.2
overview
Male, age 65
Small intestine sample 232
nTPM: 453.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 507.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 431.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 476.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

414.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 414.9
Samples: 187

Max nTPM: 1027.4
Min nTPM: 147.5
Std nTPM: 197.5
Median nTPM: 377.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1027.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 999.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 980.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 912.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 865.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 857.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 847.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 838.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 801.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 784.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 771.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 750.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 743.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 730.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 726.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 724.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 717.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 717.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 701.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 697.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 692.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 680.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 680.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 677.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 663.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 656.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 646.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 642.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 637.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 630.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 626.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 618.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 618.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 615.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 614.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 603.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 603.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 602.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 591.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 572.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 570.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 560.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 555.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 553.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 551.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 543.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 538.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 535.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 526.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 526.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 519.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 514.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 511.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 511.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 496.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 496.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 492.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 492.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 489.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 488.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 487.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 481.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 481.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 480.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 451.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 450.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 449.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 447.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 446.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 444.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 443.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 434.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 430.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 430.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 427.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 427.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 421.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 419.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 412.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 408.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 407.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 407.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 405.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 404.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 404.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 403.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 403.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 401.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 396.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 391.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 386.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 384.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 380.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 377.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 377.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 372.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 371.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 369.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 363.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 360.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 358.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 353.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 347.4
GTEX-1192X-2526-SM-59868 50-59 years, male 347.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 340.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 336.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 333.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 332.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 327.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 322.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 321.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 318.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 317.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 314.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 312.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 309.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 306.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 305.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 304.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 301.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 300.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 296.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 294.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 294.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 292.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 291.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 289.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 281.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 280.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 276.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 273.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 265.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 264.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 264.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 261.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 261.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 260.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 256.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 256.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 255.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 254.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 248.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 241.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 240.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 240.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 238.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 237.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 236.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 235.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 235.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 233.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 233.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 233.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 226.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 226.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 224.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 221.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 219.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 215.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 215.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 212.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 211.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 210.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 208.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 204.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 203.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 201.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 195.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 193.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 192.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 191.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 185.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 184.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 182.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 181.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 179.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 178.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 173.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 172.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 170.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 163.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 158.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 155.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 153.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 151.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 148.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 147.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

625.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 625.7
FF:10024-101D6 15,40,85 years, mixed 625.7

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