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TDP2
HPA
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  • TDP2
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Gradient: Ascending
Enterocytes - Microvilli: High
Goblet cells: High
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:178.2 nTPM
HPA:178.2 nTPM
GTEx:77.9 nTPM
FANTOM5:330.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB073398
Endocrine cells High
Enterocytes High
Enterocytes - Gradient Ascending
Enterocytes - Microvilli High
Goblet cells High
Paneth cells Not detected



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

178.2
overview
Male, age 65
Small intestine sample 232
nTPM: 136
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 331.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 99.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 145.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 77.9
Samples: 187

Max nTPM: 430.1
Min nTPM: 12.6
Std nTPM: 73.3
Median nTPM: 45.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 430.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 330.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 263.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 258.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 253.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 247.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 235.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 230.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 229.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 227.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 227.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 223.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 221.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 219.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 210.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 207.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 202.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 200.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 190.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 183.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 177.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 174.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 173.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 170.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 169.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 166.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 157.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 155.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 153.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 153.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 152.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 152.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 150.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 140.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 136.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 133.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 133.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 131.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 131.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 128.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 127.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 126.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 125.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 124.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 124.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 124.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 123.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 120.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 119.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 115.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 111.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 109.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 107.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 105.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 104.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 96.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 96.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 95.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 93.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 93.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 92.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 91.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 91.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 88.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 88.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 84.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 79.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 75.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 75.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 73.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 72.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 72.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 65.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 64.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 63.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 62.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 61.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 60.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 60.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 59.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 58.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 57.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 56.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 56.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 56.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 55.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 53.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 51.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 50.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 49.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 49.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 48.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 47.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 45.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 44.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 42.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 41.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 41.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 39.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 38.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 37.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 37.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 36.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 35.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 31.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 29.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 29.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 29.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 29.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 28.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 28.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 28.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 27.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 27.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 27.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 27.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 27.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 26.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 26.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 26.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 26.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 26.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 26.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 25.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 25.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 25.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 25.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 25.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 25.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 25.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 25.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 24.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 24.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 24.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 24.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 24.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 23.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 23.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 23.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 23.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 23.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 23.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 22.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 22.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 22.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 22.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 22.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 21.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 21.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 21.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 21.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 21.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 21.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 21.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 20.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 20.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 20.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 20.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 20.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 20.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 20.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 20.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 19.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 19.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 19.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 19.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 19.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 19.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 19.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 19.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 19.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 19.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 18.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 18.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 18.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 18.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 18.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 17.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 17.5
GTEX-1192X-2526-SM-59868 50-59 years, male 17.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 17.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 16.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 16.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 15.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 15.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 14.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 12.6
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

330.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 330.7
FF:10024-101D6 15,40,85 years, mixed 330.7

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