MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.8 nTPM
HPA Brain:32.6 nTPM
GTEx:56.8 nTPM
FANTOM5:47.0 Scaled Tags Per Million
Pig:38.8 nTPM
Mouse:55.1 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.6
2019 Male, age 18, unknown 34.3
1870 Female, age 42, unknown 32.1
2411 Female, age 72, unknown 31.3
1827 Male, age 72, unknown 31.2
1833 Male, age 53, unknown 30.8
2828 Female, age 72, unknown 27.2
2666 Male, age 74, left hemisphere 27.1
1830 Male, age 51, unknown 26.6
2219 Male, age 76, both hemispheres 25.3
2586 Male, age 75, left hemisphere 19.8
Dorsal raphe nucleus
nTPM: 30.8
2298 Female, age 72, unknown 33.9
1828 Male, age 53, unknown 32.1
2750 Male, age 76, both hemispheres 31.6
2047 Male, age 72, unknown 28.7
2016 Female, age 72, unknown 27.5
Inferior colliculus
nTPM: 31.2
2097 Female, age 72, unknown 35.4
1848 Female, age 42, unknown 31.6
1890 Male, age 53, unknown 29.1
2849 Male, age 72, unknown 28.7
Median raphe nucleus
nTPM: 29.4
2220 Male, age 76, midline 29.4
Periaquaductal grey, anterior
nTPM: 29.4
1947 Male, age 18, unknown 32.4
1795 Male, age 51, unknown 29.9
2502 Female, age 75, unknown 25.9
Periaquaductal grey, dorsal
nTPM: 27.6
2850 Male, age 76, both hemispheres 29.5
1840 Male, age 53, unknown 27.2
2464 Female, age 72, unknown 27.2
1831 Male, age 72, unknown 26.4
Periaquaductal grey, lateral
nTPM: 29.4
2272 Male, age 74, both hemispheres 33.0
2053 Male, age 18, unknown 28.2
2140 Male, age 76, both hemispheres 27.0
Pretectal area
nTPM: 32.6
1817 Female, age 42, unknown 37.2
1816 Male, age 51, unknown 36.7
1944 Female, age 72, unknown 35.5
2273 Male, age 74, both hemispheres 35.3
2667 Female, age 75, unknown 35.2
2007 Male, age 72, unknown 34.2
2224 Female, age 72, unknown 32.9
1815 Male, age 53, unknown 31.1
2407 Male, age 75, both hemispheres 27.9
2316 Male, age 76, right hemisphere 26.9
2825 Male, age 18, unknown 25.6
Red nucleus
nTPM: 30.7
2785 Male, age 18, unknown 35.0
2725 Female, age 75, unknown 34.8
1821 Female, age 72, unknown 33.6
1954 Female, age 42, unknown 32.3
1865 Male, age 51, unknown 32.1
2823 Male, age 76, right hemisphere 32.1
2769 Male, age 72, unknown 29.9
1904 Male, age 53, unknown 29.2
2503 Female, age 72, unknown 29.0
2227 Male, age 72, unknown 27.9
2584 Male, age 75, left hemisphere 26.6
2588 Male, age 74, left hemisphere 25.3
Substantia nigra
nTPM: 31.1
2241 Male, age 72, unknown 37.7
1889 Female, age 72, unknown 37.6
2409 Female, age 72, unknown 34.2
1941 Male, age 53, unknown 34.1
1916 Female, age 42, unknown 33.8
1851 Male, age 51, unknown 30.7
2583 Male, age 75, right hemisphere 27.4
2699 Male, age 18, unknown 26.2
2590 Female, age 75, unknown 25.9
2665 Male, age 74, both hemispheres 23.3
Superior colliculus
nTPM: 28.8
2087 Female, age 72, unknown 32.9
1796 Male, age 53, unknown 32.1
2587 Male, age 74, left hemisphere 31.5
2668 Female, age 75, unknown 30.8
2261 Male, age 18, unknown 28.8
1839 Male, age 51, unknown 27.6
1913 Female, age 42, unknown 27.4
1895 Male, age 76, right hemisphere 27.1
1995 Male, age 72, unknown 26.9
2664 Male, age 75, both hemispheres 23.0
Ventral tegmental area
nTPM: 29.6
2410 Female, age 72, unknown 32.8
2223 Female, age 72, unknown 32.7
2218 Male, age 76, both hemispheres 30.8
1915 Female, age 42, unknown 30.1
1942 Male, age 51, unknown 26.6
2021 Male, age 53, unknown 24.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 56.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.8
Samples: 139

Max nTPM: 180.7
Min nTPM: 34.2
Std nTPM: 22.7
Median nTPM: 51.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 180.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 153.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 153.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 151.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 126.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 106.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 97.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 91.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 90.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 86.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 83.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 47.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.0
FF:10158-103A5 76 years, female 47.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 38.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.8
Samples: 4

Max nTPM: 43.8
Min nTPM: 29.3
Sample A Female 43.8
Sample B Female 29.3
Sample C Male 32.5
Sample D Male 29.7
Midbrain
nTPM: 36.8
Samples: 4

Max nTPM: 40.6
Min nTPM: 29.6
Sample A Female 40.6
Sample B Female 38.1
Sample C Male 29.6
Sample D Male 38.9
Periaqueductal gray
nTPM: 34.9
Samples: 3

Max nTPM: 36.9
Min nTPM: 33.7
Sample B Female 33.7
Sample C Male 36.9
Sample D Male 34.1
Superior colliculi
nTPM: 38.9
Samples: 4

Max nTPM: 46.1
Min nTPM: 34.5
Sample A Female 46.1
Sample B Female 36.1
Sample C Male 34.5
Sample D Male 38.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 55.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.1
Samples: 4

Max nTPM: 56.4
Min nTPM: 53.8
Sample A Male 55.9
Sample B Male 54.1
Sample C Female 53.8
Sample D Female 56.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68269748 Antisense, RP_041129_02_B02, Mouse strain C57BL/6J (56 days, male) 0.4

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