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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
89.2
Sample id
Sample description
nTPM
Amygdala nTPM: 56.7
2517
Female, age 94, left hemisphere
67.3
2814
Male, age 76, right hemisphere
65.3
1987
Female, age 91, left hemisphere
61.6
2514
Male, age 75, right hemisphere
52.1
2695
Female, age 67, right hemisphere
37.4
Basal amygdala nTPM: 82.2
2243
Female, age 91, right hemisphere
113.5
2685
Female, age 94, left hemisphere
104.6
2110
Male, age 80, left hemisphere
87.4
1955
Male, age 76, both hemispheres
82.9
2827
Female, age 67, right hemisphere
59.9
2609
Male, age 75, right hemisphere
44.9
Central amygdala nTPM: 62.5
2239
Male, age 80, left hemisphere
95.4
2826
Female, age 94, left hemisphere
67.4
2701
Female, age 91, right hemisphere
57.7
1905
Male, age 76, both hemispheres
54.4
2515
Male, age 75, right hemisphere
37.4
Corticomedial amygdala nTPM: 89.2
2829
Male, age 80, left hemisphere
120.9
2242
Female, age 91, right hemisphere
94.2
2429
Female, age 94, left hemisphere
94.0
2240
Male, age 76, both hemispheres
90.7
2535
Female, age 67, right hemisphere
90.7
2428
Male, age 75, right hemisphere
44.6
Lateral amygdala nTPM: 64.8
2534
Female, age 94, left hemisphere
100.3
2256
Male, age 80, left hemisphere
79.1
1883
Male, age 76, both hemispheres
70.5
2255
Female, age 91, right hemisphere
65.2
2830
Female, age 67, right hemisphere
37.0
2516
Male, age 75, right hemisphere
36.8
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
50.8
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 50.8
Samples: 152
Max nTPM: 137.8
Min nTPM: 4.2
Std nTPM: 24.3
Median nTPM: 49.3
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
137.8
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
119.2
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
108.5
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
108.3
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
99.1
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
96.8
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
95.9
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
95.3
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
94.0
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
93.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
90.0
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
89.4
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
89.1
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
87.8
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
87.6
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
83.8
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
82.5
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
81.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
80.4
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
79.9
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
79.7
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
79.1
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
78.6
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
78.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
77.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
75.9
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
74.4
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
74.0
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
73.0
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
72.7
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
70.3
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
70.2
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
68.6
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
66.7
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
65.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
64.7
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
64.2
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
64.1
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
64.0
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
63.9
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
63.5
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
62.9
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
62.6
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
62.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
62.3
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
61.7
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
61.2
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
61.1
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
59.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
58.1
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
57.9
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
57.7
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
57.6
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
57.4
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
57.2
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
56.3
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
55.7
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
55.6
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
55.6
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
55.5
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
55.0
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
54.7
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
54.6
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
54.5
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
52.8
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
52.6
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
52.6
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
51.8
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
51.7
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
51.6
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
51.5
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
51.3
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
51.2
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
50.6
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
49.7
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
49.4
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
49.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
48.9
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
48.2
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
46.8
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
46.2
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
46.0
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
45.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
45.6
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
44.4
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
43.7
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
43.4
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
42.8
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
42.1
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
41.1
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
41.0
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
40.8
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
40.2
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
38.5
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
38.4
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
38.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
36.7
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
36.2
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
35.3
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
35.2
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
35.1
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
35.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
34.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
34.7
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
34.6
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
34.5
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
34.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
34.1
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
33.9
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
33.8
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
33.7
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
33.0
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
32.4
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
31.4
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
31.3
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
30.9
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
30.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
29.8
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
29.3
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
29.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
28.7
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
28.5
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
28.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
27.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
27.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
26.7
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
26.5
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
26.3
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
26.2
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
26.1
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
26.0
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
25.6
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
24.8
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
24.7
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
23.8
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
23.8
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
22.8
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
22.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
22.7
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
21.7
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
21.4
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
21.3
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
19.5
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
19.5
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
18.9
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
17.3
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
16.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
15.8
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
15.3
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
14.0
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
8.6
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
4.2
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
158.0
Mouse sample
Sample description
nTPM
Amygdala nTPM: 158.0
Samples: 4
Max nTPM: 175.5
Min nTPM: 138.3
Sample A
Male
175.5
Sample B
Male
158.1
Sample C
Female
138.3
Sample D
Female
160.2
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
