MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:220.4 nTPM
HPA Brain:141.8 nTPM
GTEx:220.4 nTPM
FANTOM5:191.0 Scaled Tags Per Million
Pig:204.4 nTPM
Mouse:177.4 nTPM
Allen mouse:14.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 141.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 107.7
2019 Male, age 18, unknown 142.5
1870 Female, age 42, unknown 115.9
2411 Female, age 72, unknown 115.2
1827 Male, age 72, unknown 114.9
1833 Male, age 53, unknown 106.8
2586 Male, age 75, left hemisphere 100.9
1830 Male, age 51, unknown 100.0
2666 Male, age 74, left hemisphere 99.0
2828 Female, age 72, unknown 93.7
2219 Male, age 76, both hemispheres 88.3
Dorsal raphe nucleus
nTPM: 115.5
2750 Male, age 76, both hemispheres 129.7
2298 Female, age 72, unknown 127.4
1828 Male, age 53, unknown 110.5
2047 Male, age 72, unknown 108.5
2016 Female, age 72, unknown 101.5
Inferior colliculus
nTPM: 107.1
2097 Female, age 72, unknown 122.9
1890 Male, age 53, unknown 104.8
2849 Male, age 72, unknown 101.4
1848 Female, age 42, unknown 99.2
Median raphe nucleus
nTPM: 129.8
2220 Male, age 76, midline 129.8
Periaquaductal grey, anterior
nTPM: 110.3
2502 Female, age 75, unknown 117.5
1795 Male, age 51, unknown 115.9
1947 Male, age 18, unknown 97.6
Periaquaductal grey, dorsal
nTPM: 117.3
2850 Male, age 76, both hemispheres 137.9
1840 Male, age 53, unknown 117.9
2464 Female, age 72, unknown 107.9
1831 Male, age 72, unknown 105.5
Periaquaductal grey, lateral
nTPM: 117.7
2272 Male, age 74, both hemispheres 132.6
2140 Male, age 76, both hemispheres 112.4
2053 Male, age 18, unknown 108.0
Pretectal area
nTPM: 141.8
1944 Female, age 72, unknown 183.3
1816 Male, age 51, unknown 181.0
1817 Female, age 42, unknown 176.6
2007 Male, age 72, unknown 163.9
1815 Male, age 53, unknown 161.7
2273 Male, age 74, both hemispheres 134.2
2224 Female, age 72, unknown 131.8
2667 Female, age 75, unknown 124.5
2407 Male, age 75, both hemispheres 102.7
2825 Male, age 18, unknown 100.1
2316 Male, age 76, right hemisphere 99.5
Red nucleus
nTPM: 103.5
2785 Male, age 18, unknown 130.1
1821 Female, age 72, unknown 124.6
2823 Male, age 76, right hemisphere 111.3
1904 Male, age 53, unknown 107.8
2725 Female, age 75, unknown 107.3
2503 Female, age 72, unknown 106.2
1865 Male, age 51, unknown 104.0
1954 Female, age 42, unknown 101.0
2769 Male, age 72, unknown 94.6
2227 Male, age 72, unknown 92.3
2588 Male, age 74, left hemisphere 86.0
2584 Male, age 75, left hemisphere 76.5
Substantia nigra
nTPM: 115.4
1889 Female, age 72, unknown 151.1
2241 Male, age 72, unknown 123.2
2409 Female, age 72, unknown 121.4
1851 Male, age 51, unknown 120.5
2590 Female, age 75, unknown 111.0
1941 Male, age 53, unknown 109.7
1916 Female, age 42, unknown 109.0
2665 Male, age 74, both hemispheres 107.4
2583 Male, age 75, right hemisphere 100.7
2699 Male, age 18, unknown 99.5
Superior colliculus
nTPM: 124.5
2261 Male, age 18, unknown 141.5
2087 Female, age 72, unknown 139.5
1913 Female, age 42, unknown 138.9
2587 Male, age 74, left hemisphere 137.0
1995 Male, age 72, unknown 133.4
2668 Female, age 75, unknown 126.4
1796 Male, age 53, unknown 117.8
1895 Male, age 76, right hemisphere 106.7
1839 Male, age 51, unknown 103.0
2664 Male, age 75, both hemispheres 100.4
Ventral tegmental area
nTPM: 108.3
2410 Female, age 72, unknown 128.5
2223 Female, age 72, unknown 119.6
2218 Male, age 76, both hemispheres 108.4
2021 Male, age 53, unknown 100.3
1915 Female, age 42, unknown 99.9
1942 Male, age 51, unknown 93.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 220.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 220.4
Samples: 139

Max nTPM: 500.3
Min nTPM: 136.4
Std nTPM: 62.1
Median nTPM: 205.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 500.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 497.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 452.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 358.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 354.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 348.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 332.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 329.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 324.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 324.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 323.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 191.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 191.0
FF:10158-103A5 76 years, female 191.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 204.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 186.9
Samples: 4

Max nTPM: 228.8
Min nTPM: 164.2
Sample A Female 228.8
Sample B Female 167.6
Sample C Male 187.0
Sample D Male 164.2
Midbrain
nTPM: 204.4
Samples: 4

Max nTPM: 257.9
Min nTPM: 157.0
Sample A Female 257.9
Sample B Female 198.9
Sample C Male 203.7
Sample D Male 157.0
Periaqueductal gray
nTPM: 180.1
Samples: 3

Max nTPM: 203.3
Min nTPM: 165.0
Sample B Female 172.1
Sample C Male 203.3
Sample D Male 165.0
Superior colliculi
nTPM: 196.4
Samples: 4

Max nTPM: 234.9
Min nTPM: 163.3
Sample A Female 212.1
Sample B Female 163.3
Sample C Male 234.9
Sample D Male 175.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 177.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 177.4
Samples: 4

Max nTPM: 182.8
Min nTPM: 171.4
Sample A Male 174.8
Sample B Male 171.4
Sample C Female 180.4
Sample D Female 182.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.3
69885624 Antisense, RP_050512_03_A07, Mouse strain C57BL/6J (56 days, male) 14.3

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