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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:413.5 nTPM
GTEx:413.5 nTPM
FANTOM5:285.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA022269
Squamous epithelial cells Not detected



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

413.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 413.5
Samples: 156

Max nTPM: 1844.1
Min nTPM: 5.5
Std nTPM: 361.0
Median nTPM: 339.4
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1844.1
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1333.4
GTEX-11I78-2026-SM-5987C 50-59 years, female 1169.8
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1141.2
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1079.6
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1061.9
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1053.8
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1031.7
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1005.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 993.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 967.0
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 915.1
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 900.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 898.5
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 895.6
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 884.3
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 879.4
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 869.8
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 863.4
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 854.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 826.7
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 821.7
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 812.0
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 804.1
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 796.1
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 785.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 768.5
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 767.7
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 760.7
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 759.9
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 753.4
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 748.3
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 746.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 743.7
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 740.1
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 730.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 728.6
GTEX-1C475-0526-SM-793AC 40-49 years, female 725.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 716.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 696.8
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 678.3
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 671.3
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 670.9
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 668.7
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 650.8
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 650.2
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 645.0
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 639.1
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 621.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 620.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 615.3
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 603.0
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 598.8
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 585.8
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 585.4
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 578.4
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 550.2
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 549.5
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 536.9
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 536.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 535.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 512.5
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 506.0
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 500.0
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 490.9
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 489.7
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 479.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 476.9
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 462.8
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 460.8
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 459.0
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 439.9
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 413.4
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 393.3
GTEX-16NPV-2526-SM-6M483 50-59 years, female 386.3
GTEX-QCQG-1226-SM-48U23 50-59 years, female 382.0
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 377.3
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 339.8
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 339.0
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 333.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 330.9
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 327.7
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 307.1
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 303.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 294.8
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 292.3
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 287.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 283.2
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 276.3
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 272.6
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 271.7
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 261.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 258.5
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 250.6
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 226.6
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 223.7
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 216.2
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 194.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 192.2
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 174.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 172.5
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 139.9
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 134.5
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 114.0
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 113.4
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 104.8
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 94.3
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 91.3
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 91.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 83.0
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 82.1
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 78.1
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 76.6
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 70.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 63.2
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 58.0
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 57.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 55.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 54.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 51.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 51.7
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 48.6
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 35.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 32.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 29.4
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 25.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 19.6
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 19.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 16.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 16.1
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 14.9
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 14.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 14.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 14.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 13.1
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 12.8
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 12.8
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 12.1
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 11.8
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 11.4
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 11.4
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 11.3
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 10.7
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 10.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 10.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 9.9
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 9.6
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 9.5
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 9.2
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 9.2
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 7.9
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 7.6
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 7.3
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 6.6
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 6.5
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 5.5
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

285.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 285.2
FF:10204-103F6 68 years, female 285.2

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