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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:37.5 nTPM
HPA:4.4 nTPM
GTEx:37.5 nTPM
FANTOM5:34.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA031038
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4.4
overview
Male, age 65
Small intestine sample 232
nTPM: 3.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 2.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 10.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 37.5
Samples: 187

Max nTPM: 106.0
Min nTPM: 12.3
Std nTPM: 14.9
Median nTPM: 36.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 106.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 78.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 77.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 76.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 73.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 67.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 67.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 66.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 65.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 65.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 61.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 60.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 60.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 60.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 60.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 59.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 59.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 59.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 58.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 58.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 57.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 57.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 56.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 55.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 55.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 53.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 52.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 52.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 51.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 51.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 50.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 50.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 50.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 49.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 49.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 49.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 49.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 48.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 48.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 47.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 47.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 47.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 47.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 46.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 46.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 45.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 45.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 44.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 44.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 44.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 44.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 44.5
GTEX-1192X-2526-SM-59868 50-59 years, male 44.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 44.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 44.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 44.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 44.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 43.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 43.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 43.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 43.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 43.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 42.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 42.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 42.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 42.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 42.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 42.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 41.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 41.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 41.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 41.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 40.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 40.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 40.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 40.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 39.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 39.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 38.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 38.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 38.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 37.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 37.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 37.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 37.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 37.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 36.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 36.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 36.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 36.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 36.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 36.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 36.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 36.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 35.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 35.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 35.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 35.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 35.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 34.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 34.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 34.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 34.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 34.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 33.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 33.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 33.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 33.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 32.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 32.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 31.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 31.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 31.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 31.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 31.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 30.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 30.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 30.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 29.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 29.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 29.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 29.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 29.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 28.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 28.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 28.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 28.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 28.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 27.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 27.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 27.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 27.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 27.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 27.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 27.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 27.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 26.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 26.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 26.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 25.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 25.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 25.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 25.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 24.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 24.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 24.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 24.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 24.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 23.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 23.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 23.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 23.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 22.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 22.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 22.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 22.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 22.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 22.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 22.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 22.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 22.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 21.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 21.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 21.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 21.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 21.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 20.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 20.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 20.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 20.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 19.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 19.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 19.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 19.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 19.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 18.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 18.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 18.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 17.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 17.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 16.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 16.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 15.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 15.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 15.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 14.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 12.3
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

34.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 34.8
FF:10024-101D6 15,40,85 years, mixed 34.8

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