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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Medium
Photoreceptor cells: Medium
Pigment epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:451.8 nTPM
GTEx:451.8 nTPM
FANTOM5:74.1 Scaled Tags Per Million
Pig:81.6 nTPM
Mouse:1800.0 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA055479
Pigment epithelial cells Not detected
Photoreceptor cells Medium
Limiting membrane Not detected
Outer plexiform layer Medium
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

451.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 451.8
Samples: 105

Max nTPM: 858.6
Min nTPM: 151.1
Std nTPM: 139.3
Median nTPM:
218_1 71 years, female 858.6
237_1 82 years, male 762.9
384_1 83 years, male 730.8
347_1 72 years, male 728.5
389_1 86 years, female 717.9
375_1 74 years, female 716.2
319_1 81 years, male 701.3
163_1 78 years, male 682.8
425_1 59 years, female 679.9
321_1 62 years, female 657.4
447_1 81 years, male 650.9
352_1 62 years, male 640.2
6_1 73 years, female 614.0
350_1 84 years, female 608.1
322_1 76 years, male 607.5
355_1 70 years, female 607.4
386_1 76 years, male 602.3
246_1 77 years, male 600.8
243_1 75 years, male 594.8
307_1 66 years, female 584.6
35_1 74 years, female 584.3
394_1 75 years, female 581.9
2_1 77 years, female 576.7
526_1 61 years, male 538.9
354_1 81 years, female 534.7
172_1 72 years, female 531.3
379_1 60 years, male 528.9
173_1 67 years, male 525.9
316_1 62 years, male 525.5
293_1 68 years, female 520.5
480_1 63 years, male 519.7
377_1 82 years, female 516.0
406_1 79 years, male 515.8
468_1 89 years, male 507.0
503_1 68 years, male 501.1
42_1 85 years, male 500.3
217_1 76 years, male 498.4
318_1 68 years, male 494.3
126_1 63 years, male 490.4
251_1 78 years, male 489.1
405_1 91 years, male 485.9
351_1 91 years, male 483.1
189_1 76 years, male 476.6
254_1 77 years, female 460.3
348_1 84 years, male 458.7
404_1 82 years, female 450.3
349_1 83 years, male 444.5
153_1 70 years, female 444.0
517_1 88 years, male 443.5
229_1 69 years, female 441.9
4_1 88 years, female 437.4
115_1 83 years, male 430.2
317_1 60 years, male 429.4
356_1 87 years, female 428.8
177_1 74 years, male 427.2
291_1 76 years, male 426.7
99_1 64 years, male 426.3
9_1 66 years, female 423.3
137_1 83 years, male 423.2
117_1 61 years, male 419.1
292_1 71 years, male 419.0
265_1 87 years, male 413.1
266_1 85 years, male 412.1
320_1 89 years, female 411.5
518_1 75 years, female 410.9
335_1 73 years, female 401.9
41_1 94 years, female 400.8
376_1 75 years, female 391.9
311_1 78 years, male 390.9
396_1 62 years, male 383.7
145_1 84 years, male 383.6
286_1 68 years, female 372.1
162_1 79 years, female 370.8
495_1 57 years, female 370.4
452_1 88 years, female 365.0
18_1 88 years, male 364.2
313_1 79 years, female 364.2
139_1 64 years, female 358.5
17_1 71 years, male 355.4
414_1 84 years, female 350.7
353_1 82 years, female 347.0
120_1 70 years, female 344.5
119_1 70 years, female 339.3
295_1 61 years, female 332.4
264_1 73 years, female 330.4
490_1 67 years, female 327.5
89_1 63 years, male 321.2
314_1 67 years, male 309.0
43_1 64 years, female 306.9
109_1 81 years, female 306.1
324_1 76 years, male 304.6
81_1 67 years, male 304.0
315_1 62 years, female 299.1
499_1 55 years, female 293.7
142_1 61 years, female 293.5
415_1 77 years, female 291.8
506_1 65 years, male 273.9
32_1 67 years, male 271.2
466_1 57 years, female 269.3
288_1 66 years, female 231.1
149_1 88 years, male 217.8
491_1 89 years, female 213.5
413_1 59 years, female 196.3
308_1 70 years, female 189.6
501_1 88 years, male 151.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

74.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 74.1
FF:10030-101E3 24-65 years, mixed 74.1

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.6
Pig sample Sample description nTPM
Retina
nTPM: 81.6
Samples: 4

Max nTPM: 124.1
Min nTPM: 52.6
Sample A Female 54.3
Sample B Female 95.4
Sample C Male 124.1
Sample D Male 52.6

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1800.0
Mouse sample Sample description nTPM
Retina
nTPM: 1800.0
Samples: 4

Max nTPM: 2064.0
Min nTPM: 1521.2
Sample A Male 1789.2
Sample B Male 1825.5
Sample C Female 2064.0
Sample D Female 1521.2

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