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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:621.9 nTPM
GTEx:621.9 nTPM
FANTOM5:174.6 Scaled Tags Per Million
Pig:1115.0 nTPM
Mouse:4745.7 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA029458
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

621.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 621.9
Samples: 105

Max nTPM: 1117.5
Min nTPM: 255.5
Std nTPM: 162.5
Median nTPM:
352_1 62 years, male 1117.5
172_1 72 years, female 998.3
237_1 82 years, male 952.9
375_1 74 years, female 938.5
386_1 76 years, male 927.0
355_1 70 years, female 915.6
347_1 72 years, male 896.1
389_1 86 years, female 882.0
6_1 73 years, female 865.5
218_1 71 years, female 859.0
447_1 81 years, male 852.5
316_1 62 years, male 837.3
246_1 77 years, male 800.7
229_1 69 years, female 791.8
379_1 60 years, male 783.4
354_1 81 years, female 769.0
425_1 59 years, female 767.6
189_1 76 years, male 765.3
321_1 62 years, female 760.8
350_1 84 years, female 755.1
286_1 68 years, female 737.9
526_1 61 years, male 735.5
163_1 78 years, male 731.4
324_1 76 years, male 729.8
243_1 75 years, male 728.9
217_1 76 years, male 723.9
292_1 71 years, male 720.9
319_1 81 years, male 716.9
335_1 73 years, female 712.8
35_1 74 years, female 710.3
405_1 91 years, male 706.2
126_1 63 years, male 705.1
251_1 78 years, male 702.2
9_1 66 years, female 700.9
480_1 63 years, male 692.3
177_1 74 years, male 687.9
115_1 83 years, male 678.0
468_1 89 years, male 668.6
394_1 75 years, female 668.2
99_1 64 years, male 656.8
404_1 82 years, female 656.3
153_1 70 years, female 655.3
265_1 87 years, male 647.6
490_1 67 years, female 634.4
81_1 67 years, male 633.2
466_1 57 years, female 633.0
376_1 75 years, female 631.6
348_1 84 years, male 630.6
322_1 76 years, male 629.2
503_1 68 years, male 624.3
415_1 77 years, female 622.1
349_1 83 years, male 622.0
318_1 68 years, male 621.1
291_1 76 years, male 620.2
307_1 66 years, female 616.9
43_1 64 years, female 616.7
117_1 61 years, male 614.4
356_1 87 years, female 614.0
377_1 82 years, female 610.7
406_1 79 years, male 607.4
32_1 67 years, male 606.4
384_1 83 years, male 595.1
396_1 62 years, male 593.3
320_1 89 years, female 583.8
518_1 75 years, female 580.9
517_1 88 years, male 578.8
353_1 82 years, female 574.9
162_1 79 years, female 553.1
266_1 85 years, male 552.5
293_1 68 years, female 550.6
499_1 55 years, female 547.8
414_1 84 years, female 547.2
137_1 83 years, male 543.7
173_1 67 years, male 543.0
145_1 84 years, male 542.1
142_1 61 years, female 539.6
18_1 88 years, male 533.3
311_1 78 years, male 517.4
2_1 77 years, female 513.9
254_1 77 years, female 511.3
42_1 85 years, male 507.4
313_1 79 years, female 491.6
264_1 73 years, female 489.9
317_1 60 years, male 487.0
120_1 70 years, female 472.9
315_1 62 years, female 462.7
495_1 57 years, female 459.8
17_1 71 years, male 451.1
351_1 91 years, male 448.3
139_1 64 years, female 442.3
491_1 89 years, female 423.7
288_1 66 years, female 422.6
413_1 59 years, female 419.9
149_1 88 years, male 417.8
119_1 70 years, female 415.3
506_1 65 years, male 406.2
89_1 63 years, male 381.0
41_1 94 years, female 362.9
109_1 81 years, female 358.3
314_1 67 years, male 349.1
308_1 70 years, female 348.2
452_1 88 years, female 346.5
295_1 61 years, female 341.4
4_1 88 years, female 340.3
501_1 88 years, male 255.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

174.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 174.6
FF:10030-101E3 24-65 years, mixed 174.6

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1115.0
Pig sample Sample description nTPM
Retina
nTPM: 1115.0
Samples: 4

Max nTPM: 1248.5
Min nTPM: 1005.0
Sample A Female 1005.0
Sample B Female 1173.4
Sample C Male 1248.5
Sample D Male 1033.1

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4745.7
Mouse sample Sample description nTPM
Retina
nTPM: 4745.7
Samples: 4

Max nTPM: 5375.2
Min nTPM: 4047.5
Sample A Male 4978.9
Sample B Male 4581.3
Sample C Female 5375.2
Sample D Female 4047.5

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