MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:380.6 nTPM
HPA Brain:167.6 nTPM
GTEx:380.6 nTPM
FANTOM5:146.7 Scaled Tags Per Million
Pig:331.3 nTPM
Mouse:509.7 nTPM
Allen mouse:6.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 167.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 127.3
2019 Male, age 18, unknown 169.6
2411 Female, age 72, unknown 152.7
1870 Female, age 42, unknown 149.2
1827 Male, age 72, unknown 141.7
2219 Male, age 76, both hemispheres 119.3
2666 Male, age 74, left hemisphere 112.0
2828 Female, age 72, unknown 111.4
1833 Male, age 53, unknown 110.7
2586 Male, age 75, left hemisphere 103.5
1830 Male, age 51, unknown 103.4
Dorsal raphe nucleus
nTPM: 142.0
2298 Female, age 72, unknown 195.8
1828 Male, age 53, unknown 148.1
2047 Male, age 72, unknown 132.4
2750 Male, age 76, both hemispheres 128.1
2016 Female, age 72, unknown 105.7
Inferior colliculus
nTPM: 154.5
2097 Female, age 72, unknown 224.1
1890 Male, age 53, unknown 174.5
1848 Female, age 42, unknown 127.4
2849 Male, age 72, unknown 91.9
Median raphe nucleus
nTPM: 115.2
2220 Male, age 76, midline 115.2
Periaquaductal grey, anterior
nTPM: 133.2
1947 Male, age 18, unknown 144.2
2502 Female, age 75, unknown 128.0
1795 Male, age 51, unknown 127.3
Periaquaductal grey, dorsal
nTPM: 108.4
1831 Male, age 72, unknown 114.8
1840 Male, age 53, unknown 110.5
2464 Female, age 72, unknown 110.4
2850 Male, age 76, both hemispheres 97.9
Periaquaductal grey, lateral
nTPM: 111.9
2272 Male, age 74, both hemispheres 126.5
2053 Male, age 18, unknown 120.8
2140 Male, age 76, both hemispheres 88.4
Pretectal area
nTPM: 153.9
2007 Male, age 72, unknown 216.1
1816 Male, age 51, unknown 208.7
1817 Female, age 42, unknown 192.4
1944 Female, age 72, unknown 180.5
1815 Male, age 53, unknown 164.9
2224 Female, age 72, unknown 153.6
2667 Female, age 75, unknown 138.3
2273 Male, age 74, both hemispheres 128.2
2316 Male, age 76, right hemisphere 116.4
2825 Male, age 18, unknown 105.7
2407 Male, age 75, both hemispheres 88.0
Red nucleus
nTPM: 167.6
1821 Female, age 72, unknown 269.7
2725 Female, age 75, unknown 201.9
2503 Female, age 72, unknown 189.5
2785 Male, age 18, unknown 165.4
1865 Male, age 51, unknown 164.3
1904 Male, age 53, unknown 161.5
2227 Male, age 72, unknown 156.5
2769 Male, age 72, unknown 152.3
2823 Male, age 76, right hemisphere 150.6
1954 Female, age 42, unknown 143.4
2588 Male, age 74, left hemisphere 142.0
2584 Male, age 75, left hemisphere 113.5
Substantia nigra
nTPM: 159.3
1916 Female, age 42, unknown 210.8
1889 Female, age 72, unknown 210.2
1851 Male, age 51, unknown 192.6
2241 Male, age 72, unknown 188.8
1941 Male, age 53, unknown 157.8
2409 Female, age 72, unknown 143.6
2665 Male, age 74, both hemispheres 134.9
2699 Male, age 18, unknown 125.3
2590 Female, age 75, unknown 116.7
2583 Male, age 75, right hemisphere 112.7
Superior colliculus
nTPM: 128.9
2668 Female, age 75, unknown 152.8
2587 Male, age 74, left hemisphere 148.1
2087 Female, age 72, unknown 144.0
1895 Male, age 76, right hemisphere 143.4
1796 Male, age 53, unknown 136.8
2261 Male, age 18, unknown 136.6
1913 Female, age 42, unknown 126.7
1995 Male, age 72, unknown 112.6
1839 Male, age 51, unknown 102.7
2664 Male, age 75, both hemispheres 85.4
Ventral tegmental area
nTPM: 149.4
1915 Female, age 42, unknown 171.1
2223 Female, age 72, unknown 169.9
2410 Female, age 72, unknown 169.9
2218 Male, age 76, both hemispheres 146.3
1942 Male, age 51, unknown 131.7
2021 Male, age 53, unknown 107.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 380.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 380.6
Samples: 139

Max nTPM: 1044.7
Min nTPM: 204.8
Std nTPM: 126.3
Median nTPM: 359.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1044.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 903.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 769.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 721.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 661.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 619.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 595.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 593.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 577.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 567.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 558.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 146.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 146.7
FF:10158-103A5 76 years, female 146.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 331.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 255.4
Samples: 4

Max nTPM: 387.9
Min nTPM: 178.0
Sample A Female 387.9
Sample B Female 220.6
Sample C Male 235.1
Sample D Male 178.0
Midbrain
nTPM: 273.6
Samples: 4

Max nTPM: 339.5
Min nTPM: 224.2
Sample A Female 272.8
Sample B Female 224.2
Sample C Male 339.5
Sample D Male 257.9
Periaqueductal gray
nTPM: 161.3
Samples: 3

Max nTPM: 176.3
Min nTPM: 141.7
Sample B Female 176.3
Sample C Male 166.0
Sample D Male 141.7
Superior colliculi
nTPM: 331.3
Samples: 4

Max nTPM: 432.4
Min nTPM: 236.7
Sample A Female 341.7
Sample B Female 314.3
Sample C Male 432.4
Sample D Male 236.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 509.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 509.7
Samples: 4

Max nTPM: 531.9
Min nTPM: 496.9
Sample A Male 531.9
Sample B Male 496.9
Sample C Female 500.5
Sample D Female 509.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.7
68301443 Antisense, RP_041130_01_C06, Mouse strain C57BL/6J (56 days, male) 6.7

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