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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:324.5 nTPM
HPA:324.5 nTPM
GTEx:195.3 nTPM
FANTOM5:144.3 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

324.5
overview
Male, age 65
Small intestine sample 232
nTPM: 286.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 364.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 285.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 361.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

195.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 195.3
Samples: 187

Max nTPM: 462.9
Min nTPM: 70.6
Std nTPM: 77.6
Median nTPM: 178.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 462.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 418.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 376.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 359.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 355.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 351.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 348.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 345.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 344.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 340.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 340.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 337.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 337.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 326.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 325.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 324.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 324.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 323.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 320.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 315.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 311.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 307.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 302.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 296.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 295.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 292.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 284.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 279.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 277.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 272.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 271.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 271.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 266.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 265.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 264.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 264.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 263.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 262.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 259.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 255.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 255.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 254.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 252.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 252.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 248.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 247.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 245.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 244.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 244.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 238.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 237.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 233.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 232.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 231.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 229.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 228.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 227.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 223.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 220.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 220.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 219.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 219.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 219.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 217.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 215.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 215.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 212.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 212.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 212.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 212.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 211.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 210.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 207.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 206.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 205.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 205.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 200.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 199.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 199.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 199.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 198.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 196.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 194.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 193.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 192.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 191.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 189.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 187.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 185.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 185.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 181.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 180.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 178.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 178.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 178.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 176.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 175.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 174.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 174.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 174.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 172.7
GTEX-1192X-2526-SM-59868 50-59 years, male 172.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 171.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 171.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 170.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 170.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 168.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 167.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 167.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 166.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 166.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 164.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 164.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 162.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 161.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 159.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 158.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 158.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 158.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 157.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 155.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 155.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 155.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 154.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 154.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 153.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 152.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 152.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 151.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 151.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 149.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 149.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 147.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 147.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 146.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 146.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 143.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 140.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 139.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 132.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 130.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 126.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 125.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 125.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 124.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 124.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 124.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 123.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 122.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 122.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 121.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 121.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 120.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 119.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 117.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 116.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 114.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 114.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 114.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 113.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 112.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 112.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 110.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 110.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 109.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 109.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 108.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 105.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 104.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 103.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 103.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 101.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 101.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 100.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 94.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 93.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 92.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 90.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 89.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 88.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 87.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 86.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 82.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 81.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 78.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 77.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 70.6
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

144.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 144.3
FF:10024-101D6 15,40,85 years, mixed 144.3

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