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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
650.2
nTPM
GTEx:
650.2
nTPM
FANTOM5:
245.1
Scaled Tags Per Million
Pig:
273.4
nTPM
Mouse:
419.2
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA027142
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA030332
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA030333
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
650.2
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 650.2
Samples: 105
Max nTPM: 1038.2
Min nTPM: 257.7
Std nTPM: 174.6
Median nTPM:
415_1
77 years, female
1038.2
217_1
76 years, male
999.5
246_1
77 years, male
961.8
490_1
67 years, female
960.0
526_1
61 years, male
951.3
414_1
84 years, female
949.9
43_1
64 years, female
944.7
324_1
76 years, male
921.3
162_1
79 years, female
899.1
32_1
67 years, male
877.9
126_1
63 years, male
876.2
468_1
89 years, male
875.4
352_1
62 years, male
874.4
466_1
57 years, female
870.1
229_1
69 years, female
867.3
117_1
61 years, male
845.2
6_1
73 years, female
821.0
491_1
89 years, female
807.5
499_1
55 years, female
804.4
81_1
67 years, male
799.4
311_1
78 years, male
789.2
348_1
84 years, male
788.3
386_1
76 years, male
786.6
115_1
83 years, male
783.6
495_1
57 years, female
783.4
447_1
81 years, male
775.5
316_1
62 years, male
772.9
149_1
88 years, male
770.5
347_1
72 years, male
767.6
35_1
74 years, female
767.3
321_1
62 years, female
765.0
153_1
70 years, female
750.8
355_1
70 years, female
745.4
251_1
78 years, male
740.7
266_1
85 years, male
739.5
142_1
61 years, female
735.3
315_1
62 years, female
731.7
9_1
66 years, female
728.2
237_1
82 years, male
725.3
425_1
59 years, female
722.4
18_1
88 years, male
722.0
518_1
75 years, female
718.4
405_1
91 years, male
714.9
413_1
59 years, female
696.6
172_1
72 years, female
695.1
389_1
86 years, female
688.7
139_1
64 years, female
684.4
265_1
87 years, male
673.8
2_1
77 years, female
673.2
319_1
81 years, male
669.8
350_1
84 years, female
663.7
503_1
68 years, male
650.0
377_1
82 years, female
643.1
292_1
71 years, male
639.0
375_1
74 years, female
630.4
99_1
64 years, male
626.3
189_1
76 years, male
625.1
335_1
73 years, female
624.4
89_1
63 years, male
614.6
406_1
79 years, male
613.8
286_1
68 years, female
613.0
313_1
79 years, female
612.6
356_1
87 years, female
605.3
293_1
68 years, female
601.4
349_1
83 years, male
592.1
376_1
75 years, female
587.9
404_1
82 years, female
581.4
354_1
81 years, female
576.9
243_1
75 years, male
570.7
517_1
88 years, male
568.6
396_1
62 years, male
559.5
17_1
71 years, male
556.3
379_1
60 years, male
554.6
254_1
77 years, female
551.9
322_1
76 years, male
549.4
145_1
84 years, male
547.5
307_1
66 years, female
545.6
318_1
68 years, male
537.5
480_1
63 years, male
536.9
291_1
76 years, male
528.2
177_1
74 years, male
528.0
218_1
71 years, female
527.2
109_1
81 years, female
524.4
137_1
83 years, male
515.8
42_1
85 years, male
501.4
120_1
70 years, female
495.8
163_1
78 years, male
487.2
320_1
89 years, female
487.1
384_1
83 years, male
485.9
173_1
67 years, male
467.4
353_1
82 years, female
448.1
119_1
70 years, female
438.4
394_1
75 years, female
427.5
351_1
91 years, male
417.5
4_1
88 years, female
415.6
317_1
60 years, male
386.8
264_1
73 years, female
372.3
308_1
70 years, female
369.6
288_1
66 years, female
357.5
314_1
67 years, male
348.2
41_1
94 years, female
346.2
501_1
88 years, male
342.6
506_1
65 years, male
295.1
295_1
61 years, female
274.4
452_1
88 years, female
257.7
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
