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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:45.9 nTPM
HPA:45.9 nTPM
GTEx:27.5 nTPM
FANTOM5:76.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA036913Antibody HPA036914Antibody CAB032907
Glandular cells HighMediumHigh




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.9
overview
Male, age 65
Small intestine sample 232
nTPM: 44.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 60.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 31.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 47.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

27.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 27.5
Samples: 187

Max nTPM: 108.7
Min nTPM: 5.3
Std nTPM: 19.4
Median nTPM: 20.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 108.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 88.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 85.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 81.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 80.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 76.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 74.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 71.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 70.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 65.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 65.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 64.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 58.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 57.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 57.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 55.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 55.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 55.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 55.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 55.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 53.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 52.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 51.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 50.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 48.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 48.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 47.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 47.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 47.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 46.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 46.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 45.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 45.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 45.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 45.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 44.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 44.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 44.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 44.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 43.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 42.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 42.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 41.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 41.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 41.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 40.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 38.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 38.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 38.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 37.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 37.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 36.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 36.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 36.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 36.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 35.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 35.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 35.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 33.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 33.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 33.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 32.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 32.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 30.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 30.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 30.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 30.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 29.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 28.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 27.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 27.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 27.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 27.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 27.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 27.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 26.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 26.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 26.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 26.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 25.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 24.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 24.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 24.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 24.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 23.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 23.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 23.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 23.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 22.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 22.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 21.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 21.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 21.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 20.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 20.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 19.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 19.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 19.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 19.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 18.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 18.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 18.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 18.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 18.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 17.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 16.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 16.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 16.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 16.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 16.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 16.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 16.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 16.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 16.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 15.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 15.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 15.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 15.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 15.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 14.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 14.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 14.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 14.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 13.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 13.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 13.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 13.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 12.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 12.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 12.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 12.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 12.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 12.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 12.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 12.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 12.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 12.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 12.1
GTEX-1192X-2526-SM-59868 50-59 years, male 12.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 12.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 12.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 11.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 11.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 11.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 11.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 11.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 11.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 11.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 11.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 11.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 11.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 11.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 11.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 11.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 10.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 10.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 10.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 10.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 10.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 10.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 10.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 10.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 10.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 10.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 10.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 10.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 9.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 9.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 9.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 9.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 9.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 9.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 9.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 9.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 9.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 9.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 9.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 9.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 8.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 8.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 8.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 8.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 8.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 7.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 7.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 6.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 5.3
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

76.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 76.7
FF:10024-101D6 15,40,85 years, mixed 76.7

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