MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.3 nTPM
HPA Brain:45.8 nTPM
GTEx:15.3 nTPM
FANTOM5:1.3 Scaled Tags Per Million
Pig:19.7 nTPM
Mouse:25.4 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 45.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.6
2586 Male, age 75, left hemisphere 73.9
2019 Male, age 18, unknown 52.1
2666 Male, age 74, left hemisphere 45.5
1827 Male, age 72, unknown 42.7
2828 Female, age 72, unknown 41.3
1830 Male, age 51, unknown 36.7
1870 Female, age 42, unknown 35.2
1833 Male, age 53, unknown 33.0
2411 Female, age 72, unknown 30.3
2219 Male, age 76, both hemispheres 25.7
Dorsal raphe nucleus
nTPM: 36.6
2298 Female, age 72, unknown 41.4
2047 Male, age 72, unknown 38.2
2750 Male, age 76, both hemispheres 37.2
2016 Female, age 72, unknown 36.6
1828 Male, age 53, unknown 29.4
Inferior colliculus
nTPM: 38.9
2849 Male, age 72, unknown 52.7
1848 Female, age 42, unknown 43.3
1890 Male, age 53, unknown 30.6
2097 Female, age 72, unknown 28.9
Median raphe nucleus
nTPM: 37.0
2220 Male, age 76, midline 37.0
Periaquaductal grey, anterior
nTPM: 45.2
1795 Male, age 51, unknown 48.7
1947 Male, age 18, unknown 47.3
2502 Female, age 75, unknown 39.5
Periaquaductal grey, dorsal
nTPM: 43.1
1840 Male, age 53, unknown 55.0
2850 Male, age 76, both hemispheres 51.2
2464 Female, age 72, unknown 39.9
1831 Male, age 72, unknown 26.4
Periaquaductal grey, lateral
nTPM: 39.2
2140 Male, age 76, both hemispheres 57.8
2272 Male, age 74, both hemispheres 32.1
2053 Male, age 18, unknown 27.6
Pretectal area
nTPM: 45.8
2007 Male, age 72, unknown 91.0
1817 Female, age 42, unknown 68.0
2316 Male, age 76, right hemisphere 60.7
1815 Male, age 53, unknown 53.1
2224 Female, age 72, unknown 45.8
2407 Male, age 75, both hemispheres 41.4
2667 Female, age 75, unknown 33.6
2825 Male, age 18, unknown 33.2
2273 Male, age 74, both hemispheres 28.7
1944 Female, age 72, unknown 24.6
1816 Male, age 51, unknown 23.4
Red nucleus
nTPM: 32.0
2785 Male, age 18, unknown 56.3
2588 Male, age 74, left hemisphere 44.2
2584 Male, age 75, left hemisphere 43.9
2725 Female, age 75, unknown 39.7
2823 Male, age 76, right hemisphere 34.4
2227 Male, age 72, unknown 26.9
2769 Male, age 72, unknown 26.7
2503 Female, age 72, unknown 25.2
1821 Female, age 72, unknown 23.1
1865 Male, age 51, unknown 22.9
1954 Female, age 42, unknown 21.8
1904 Male, age 53, unknown 18.5
Substantia nigra
nTPM: 39.2
1889 Female, age 72, unknown 52.9
2665 Male, age 74, both hemispheres 52.1
1941 Male, age 53, unknown 50.4
1851 Male, age 51, unknown 44.0
2241 Male, age 72, unknown 40.1
2583 Male, age 75, right hemisphere 38.0
2590 Female, age 75, unknown 30.4
2409 Female, age 72, unknown 29.1
2699 Male, age 18, unknown 28.5
1916 Female, age 42, unknown 26.5
Superior colliculus
nTPM: 35.2
2664 Male, age 75, both hemispheres 51.9
1839 Male, age 51, unknown 51.5
1796 Male, age 53, unknown 45.2
2668 Female, age 75, unknown 44.1
2587 Male, age 74, left hemisphere 38.8
1895 Male, age 76, right hemisphere 38.5
2261 Male, age 18, unknown 28.8
2087 Female, age 72, unknown 20.5
1995 Male, age 72, unknown 17.7
1913 Female, age 42, unknown 15.1
Ventral tegmental area
nTPM: 42.5
1942 Male, age 51, unknown 53.9
2218 Male, age 76, both hemispheres 45.2
2223 Female, age 72, unknown 43.7
1915 Female, age 42, unknown 41.7
2021 Male, age 53, unknown 40.1
2410 Female, age 72, unknown 30.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.3
Samples: 139

Max nTPM: 27.0
Min nTPM: 5.5
Std nTPM: 4.2
Median nTPM: 14.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 27.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 26.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 26.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 24.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 24.2
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 23.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 23.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 23.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 22.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 22.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 21.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.3
FF:10158-103A5 76 years, female 1.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 19.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.5
Samples: 4

Max nTPM: 10.5
Min nTPM: 6.9
Sample A Female 10.2
Sample B Female 10.5
Sample C Male 10.4
Sample D Male 6.9
Midbrain
nTPM: 15.6
Samples: 4

Max nTPM: 22.2
Min nTPM: 6.1
Sample A Female 6.1
Sample B Female 12.4
Sample C Male 22.2
Sample D Male 21.5
Periaqueductal gray
nTPM: 14.9
Samples: 3

Max nTPM: 17.8
Min nTPM: 13.0
Sample B Female 13.8
Sample C Male 17.8
Sample D Male 13.0
Superior colliculi
nTPM: 19.8
Samples: 4

Max nTPM: 24.6
Min nTPM: 16.5
Sample A Female 16.5
Sample B Female 17.5
Sample C Male 24.6
Sample D Male 20.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 25.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.4
Samples: 4

Max nTPM: 27.7
Min nTPM: 23.4
Sample A Male 27.7
Sample B Male 26.0
Sample C Female 24.5
Sample D Female 23.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71020389 Antisense, RP_050725_01_A09, Mouse strain C57BL/6J (56 days, male) 0.7
385994 Antisense, RP_040625_01_G02, Mouse strain C57BL/6J (56 days, male) 0.0

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