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CLINT1
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

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  • CLINT1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

CLINT1
Synonyms CLINT, ENTH, EPNR, KIAA0171
Gene descriptioni

Full gene name according to HGNC.

Clathrin interactor 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Plasma proteins
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 5
Cytoband q33.3
Chromosome location (bp) 157785743 - 157859145
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

6
Ensembl ENSG00000113282 (version 109)
Entrez gene 9685
HGNC HGNC:23186
UniProt Q14677 (UniProt - Evidence at protein level)
neXtProt NX_Q14677
GeneCards CLINT1
Antibodypedia CLINT1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Binds to membranes enriched in phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2). May have a role in transport via clathrin-coated vesicles from the trans-Golgi network to endosomes. Stimulates clathrin assembly.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Endocytosis
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Lipid-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a protein with similarity to the epsin family of endocytic adapter proteins. The encoded protein interacts with clathrin, the adapter protein AP-1 and phosphoinositides. This protein may be involved in the formation of clathrin coated vesicles and trafficking between the trans-Golgi network and endosomes. Mutations in this gene are associated with a susceptibility to schizophrenia and psychotic disorders. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Sep 2010]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
CLINT1-201
ENSP00000388340
ENST00000411809
Q14677
[Direct mapping] Clathrin interactor 1
Show all
A0A0S2Z4Y4
[Target identity:100%; Query identity:100%] Clathrin interactor 1 isoform 1
Show all
Transporters
   Accessory Factors Involved in Transport
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005543 [phospholipid binding]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005794 [Golgi apparatus]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006897 [endocytosis]
GO:0008289 [lipid binding]
GO:0016020 [membrane]
GO:0016192 [vesicle-mediated transport]
GO:0030125 [clathrin vesicle coat]
GO:0030136 [clathrin-coated vesicle]
GO:0030276 [clathrin binding]
GO:0031410 [cytoplasmic vesicle]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0045296 [cadherin binding]
GO:0048471 [perinuclear region of cytoplasm]
Show all
625 aa
68.3 kDa
No 0
CLINT1-204
ENSP00000433013
ENST00000521615
H0YD52
[Direct mapping] Clathrin interactor 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
133 aa
13.1 kDa
No 0
CLINT1-205
ENSP00000434334
ENST00000522381
H0YDU9
[Direct mapping] Clathrin interactor 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
66 aa
7.3 kDa
No 0
CLINT1-206
ENSP00000429345
ENST00000523094
Q14677
[Direct mapping] Clathrin interactor 1
Show all
Transporters
   Accessory Factors Involved in Transport
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005543 [phospholipid binding]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005794 [Golgi apparatus]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006897 [endocytosis]
GO:0008289 [lipid binding]
GO:0016020 [membrane]
GO:0016192 [vesicle-mediated transport]
GO:0030125 [clathrin vesicle coat]
GO:0030136 [clathrin-coated vesicle]
GO:0030276 [clathrin binding]
GO:0031410 [cytoplasmic vesicle]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0045296 [cadherin binding]
GO:0048471 [perinuclear region of cytoplasm]
Show all
625 aa
68.2 kDa
No 0
CLINT1-207
ENSP00000429824
ENST00000523908
Q14677
[Direct mapping] Clathrin interactor 1
Show all
A0A0S2Z5H3
[Target identity:100%; Query identity:100%] Clathrin interactor 1 isoform 2
Show all
Transporters
   Accessory Factors Involved in Transport
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005543 [phospholipid binding]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005794 [Golgi apparatus]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006897 [endocytosis]
GO:0008289 [lipid binding]
GO:0016020 [membrane]
GO:0016192 [vesicle-mediated transport]
GO:0030125 [clathrin vesicle coat]
GO:0030136 [clathrin-coated vesicle]
GO:0030276 [clathrin binding]
GO:0031410 [cytoplasmic vesicle]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0045296 [cadherin binding]
GO:0048471 [perinuclear region of cytoplasm]
Show all
643 aa
70.3 kDa
No 0
CLINT1-210
ENSP00000433419
ENST00000530742
Q14677
[Direct mapping] Clathrin interactor 1
Show all
Transporters
   Accessory Factors Involved in Transport
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005543 [phospholipid binding]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005794 [Golgi apparatus]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006897 [endocytosis]
GO:0008289 [lipid binding]
GO:0016020 [membrane]
GO:0016192 [vesicle-mediated transport]
GO:0030125 [clathrin vesicle coat]
GO:0030136 [clathrin-coated vesicle]
GO:0030276 [clathrin binding]
GO:0031410 [cytoplasmic vesicle]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0045296 [cadherin binding]
GO:0048471 [perinuclear region of cytoplasm]
Show all
625 aa
68.2 kDa
No 0

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