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SLC27A6
HPA
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  • SUMMARY

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  • SLC27A6
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLC27A6
Synonyms ACSVL2, FACVL2, FATP6, VLCS-H1
Gene descriptioni

Full gene name according to HGNC.

Solute carrier family 27 member 6
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Metabolic proteins
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 5
Cytoband q23.3
Chromosome location (bp) 128538013 - 129033642
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000113396 (version 109)
Entrez gene 28965
HGNC HGNC:11000
UniProt Q9Y2P4 (UniProt - Evidence at transcript level)
neXtProt NX_Q9Y2P4
GeneCards SLC27A6
Antibodypedia SLC27A6 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Mediates the import of long-chain fatty acids (LCFA) into the cell by facilitating their transport at the plasma membrane 1. Also functions as an acyl-CoA ligase catalyzing the ATP-dependent formation of fatty acyl-CoA using LCFA and very-long-chain fatty acids (VLCFA) as substrates (By similarity). Plays a pivotal role in regulating available LCFA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation such as the heart 2.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Ligase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Fatty acid metabolism, Lipid metabolism, Lipid transport, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Nucleotide-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the fatty acid transport protein family (FATP). FATPs are involved in the uptake of long-chain fatty acids and have unique expression patterns. Alternatively spliced transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLC27A6-201
ENSP00000262462
ENST00000262462
Q9Y2P4
[Direct mapping] Long-chain fatty acid transport protein 6
Show all
Enzymes
   ENZYME proteins
   Ligase
Metabolic proteins
Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000038 [very long-chain fatty acid metabolic process]
GO:0000166 [nucleotide binding]
GO:0001676 [long-chain fatty acid metabolic process]
GO:0004467 [long-chain fatty acid-CoA ligase activity]
GO:0005324 [long-chain fatty acid transporter activity]
GO:0005886 [plasma membrane]
GO:0006629 [lipid metabolic process]
GO:0006631 [fatty acid metabolic process]
GO:0006869 [lipid transport]
GO:0015245 [fatty acid transmembrane transporter activity]
GO:0015711 [organic anion transport]
GO:0015908 [fatty acid transport]
GO:0015909 [long-chain fatty acid transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016874 [ligase activity]
GO:0031957 [very long-chain fatty acid-CoA ligase activity]
GO:0042383 [sarcolemma]
GO:0047676 [arachidonate-CoA ligase activity]
GO:1901480 [oleate transmembrane transporter activity]
Show all
619 aa
70.1 kDa
No 2
SLC27A6-202
ENSP00000378684
ENST00000395266
Q9Y2P4
[Direct mapping] Long-chain fatty acid transport protein 6
Show all
Enzymes
   ENZYME proteins
   Ligase
Metabolic proteins
Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000038 [very long-chain fatty acid metabolic process]
GO:0000166 [nucleotide binding]
GO:0001676 [long-chain fatty acid metabolic process]
GO:0004467 [long-chain fatty acid-CoA ligase activity]
GO:0005324 [long-chain fatty acid transporter activity]
GO:0005886 [plasma membrane]
GO:0006629 [lipid metabolic process]
GO:0006631 [fatty acid metabolic process]
GO:0006869 [lipid transport]
GO:0015245 [fatty acid transmembrane transporter activity]
GO:0015711 [organic anion transport]
GO:0015908 [fatty acid transport]
GO:0015909 [long-chain fatty acid transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016874 [ligase activity]
GO:0031957 [very long-chain fatty acid-CoA ligase activity]
GO:0042383 [sarcolemma]
GO:0047676 [arachidonate-CoA ligase activity]
GO:1901480 [oleate transmembrane transporter activity]
Show all
619 aa
70.1 kDa
No 2
SLC27A6-203
ENSP00000421024
ENST00000506176
Q9Y2P4
[Direct mapping] Long-chain fatty acid transport protein 6
Show all
Enzymes
   ENZYME proteins
   Ligase
Metabolic proteins
Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000038 [very long-chain fatty acid metabolic process]
GO:0000166 [nucleotide binding]
GO:0001676 [long-chain fatty acid metabolic process]
GO:0004467 [long-chain fatty acid-CoA ligase activity]
GO:0005324 [long-chain fatty acid transporter activity]
GO:0005886 [plasma membrane]
GO:0006629 [lipid metabolic process]
GO:0006631 [fatty acid metabolic process]
GO:0006869 [lipid transport]
GO:0015245 [fatty acid transmembrane transporter activity]
GO:0015711 [organic anion transport]
GO:0015908 [fatty acid transport]
GO:0015909 [long-chain fatty acid transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016874 [ligase activity]
GO:0031957 [very long-chain fatty acid-CoA ligase activity]
GO:0042383 [sarcolemma]
GO:0047676 [arachidonate-CoA ligase activity]
GO:1901480 [oleate transmembrane transporter activity]
Show all
619 aa
70.1 kDa
No 2
SLC27A6-204
ENSP00000421759
ENST00000508645
D6RAJ2
[Direct mapping] Long-chain fatty acid transport protein 6
Show all
Metabolic proteins
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004467 [long-chain fatty acid-CoA ligase activity]
GO:0006629 [lipid metabolic process]
GO:0015908 [fatty acid transport]
GO:0016021 [integral component of membrane]
GO:0031957 [very long-chain fatty acid-CoA ligase activity]
Show all
162 aa
17.7 kDa
No 0

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