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  • SKP1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:504.5 nTPM
FANTOM5:608.6 Scaled Tags Per Million
Pig:4.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB012982
Glial cells High
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

504.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 504.5
Samples: 246

Max nTPM: 1017.4
Min nTPM: 307.5
Std nTPM: 105.6
Median nTPM: 480.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1017.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 977.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 888.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 883.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 831.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 809.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 795.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 769.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 763.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 750.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 682.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 681.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 675.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 674.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 670.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 666.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 663.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 658.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 657.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 656.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 650.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 649.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 645.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 643.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 641.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 640.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 638.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 630.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 617.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 616.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 616.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 616.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 613.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 602.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 602.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 600.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 599.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 598.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 584.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 579.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 573.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 571.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 571.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 567.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 567.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 567.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 566.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 565.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 563.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 563.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 561.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 561.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 561.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 560.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 559.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 554.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 554.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 551.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 550.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 550.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 549.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 549.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 549.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 549.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 549.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 548.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 548.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 546.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 545.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 544.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 543.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 541.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 539.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 539.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 533.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 529.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 528.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 527.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 527.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 526.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 525.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 520.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 520.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 518.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 515.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 514.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 514.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 510.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 510.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 509.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 506.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 504.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 503.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 501.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 501.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 501.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 500.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 499.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 495.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 495.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 495.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 495.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 494.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 493.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 492.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 492.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 492.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 492.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 492.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 491.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 490.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 490.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 489.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 488.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 487.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 487.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 487.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 485.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 482.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 482.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 481.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 480.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 480.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 480.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 478.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 478.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 478.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 478.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 478.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 477.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 477.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 476.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 474.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 474.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 473.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 472.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 471.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 471.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 471.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 471.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 471.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 471.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 470.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 469.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 469.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 466.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 466.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 466.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 466.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 465.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 465.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 463.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 463.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 462.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 462.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 461.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 460.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 459.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 459.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 459.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 459.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 458.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 458.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 457.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 457.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 457.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 456.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 455.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 454.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 454.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 453.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 452.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 452.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 451.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 450.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 449.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 448.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 447.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 446.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 446.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 446.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 445.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 444.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 444.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 442.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 441.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 440.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 440.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 440.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 439.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 433.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 432.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 432.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 432.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 428.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 428.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 427.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 426.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 426.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 420.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 420.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 420.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 419.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 419.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 416.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 415.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 415.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 414.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 414.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 413.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 412.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 408.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 407.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 404.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 403.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 401.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 400.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 400.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 398.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 396.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 396.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 395.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 394.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 394.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 393.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 393.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 392.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 392.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 391.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 389.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 387.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 384.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 382.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 382.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 381.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 380.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 374.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 368.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 358.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 354.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 347.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 344.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 343.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 341.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 317.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 307.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

608.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 608.6
FF:10164-103B2 76 years, female 608.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4.1
Pig sample Sample description nTPM
Caudate
nTPM: 4.1
Samples: 4

Max nTPM: 5.2
Min nTPM: 2.8
Sample A Female 5.2
Sample B Female 2.8
Sample C Male 3.2
Sample D Male 5.1

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