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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:344.8 nTPM
HPA:174.9 nTPM
GTEx:344.8 nTPM
FANTOM5:463.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB012982
Glandular cells Low



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

174.9
overview
Male, age 65
Small intestine sample 232
nTPM: 172.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 195.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 157.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 174.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

344.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 344.8
Samples: 187

Max nTPM: 633.7
Min nTPM: 222.1
Std nTPM: 79.9
Median nTPM: 332.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 633.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 582.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 573.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 540.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 523.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 521.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 516.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 515.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 515.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 504.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 502.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 491.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 471.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 467.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 467.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 463.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 462.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 460.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 454.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 449.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 442.2
GTEX-1192X-2526-SM-59868 50-59 years, male 439.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 439.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 435.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 435.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 433.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 431.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 428.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 426.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 425.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 425.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 424.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 424.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 421.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 419.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 419.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 415.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 410.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 409.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 409.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 405.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 403.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 403.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 403.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 399.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 397.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 397.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 392.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 386.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 383.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 381.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 378.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 377.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 376.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 375.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 374.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 372.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 371.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 370.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 370.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 370.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 369.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 369.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 368.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 368.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 366.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 366.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 364.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 364.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 363.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 362.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 362.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 359.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 355.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 355.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 354.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 352.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 352.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 352.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 351.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 350.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 349.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 348.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 348.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 346.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 346.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 343.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 341.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 340.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 340.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 336.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 336.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 334.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 332.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 330.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 330.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 327.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 327.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 327.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 325.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 321.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 321.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 321.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 320.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 318.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 318.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 317.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 315.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 314.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 314.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 312.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 310.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 307.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 306.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 306.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 305.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 304.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 303.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 301.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 300.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 297.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 296.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 296.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 293.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 293.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 291.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 291.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 291.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 288.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 288.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 287.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 287.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 287.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 286.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 285.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 285.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 284.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 284.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 281.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 280.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 280.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 278.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 277.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 276.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 275.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 275.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 274.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 273.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 270.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 269.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 267.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 266.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 266.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 266.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 265.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 265.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 265.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 264.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 264.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 264.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 263.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 262.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 262.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 261.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 260.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 258.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 256.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 256.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 255.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 255.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 254.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 254.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 250.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 250.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 249.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 248.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 247.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 244.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 244.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 243.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 243.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 240.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 238.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 231.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 226.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 223.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 222.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

463.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 463.6
FF:10024-101D6 15,40,85 years, mixed 463.6

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