MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.8 nTPM
HPA Brain:144.2 nTPM
GTEx:13.8 nTPM
FANTOM5:148.8 Scaled Tags Per Million
Pig:138.0 nTPM
Mouse:9.3 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 144.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 117.8
2586 Male, age 75, left hemisphere 177.6
2019 Male, age 18, unknown 138.3
1870 Female, age 42, unknown 126.6
2828 Female, age 72, unknown 125.7
1827 Male, age 72, unknown 118.1
1830 Male, age 51, unknown 113.5
1833 Male, age 53, unknown 110.1
2411 Female, age 72, unknown 104.6
2666 Male, age 74, left hemisphere 100.7
2219 Male, age 76, both hemispheres 62.9
Dorsal raphe nucleus
nTPM: 122.6
2016 Female, age 72, unknown 158.1
1828 Male, age 53, unknown 123.3
2298 Female, age 72, unknown 117.5
2047 Male, age 72, unknown 117.0
2750 Male, age 76, both hemispheres 97.2
Inferior colliculus
nTPM: 117.4
1848 Female, age 42, unknown 121.5
2097 Female, age 72, unknown 120.6
2849 Male, age 72, unknown 120.6
1890 Male, age 53, unknown 107.0
Median raphe nucleus
nTPM: 92.4
2220 Male, age 76, midline 92.4
Periaquaductal grey, anterior
nTPM: 132.4
2502 Female, age 75, unknown 164.7
1947 Male, age 18, unknown 121.3
1795 Male, age 51, unknown 111.1
Periaquaductal grey, dorsal
nTPM: 144.2
2850 Male, age 76, both hemispheres 172.6
1840 Male, age 53, unknown 161.8
2464 Female, age 72, unknown 131.7
1831 Male, age 72, unknown 110.9
Periaquaductal grey, lateral
nTPM: 129.6
2140 Male, age 76, both hemispheres 180.8
2053 Male, age 18, unknown 110.9
2272 Male, age 74, both hemispheres 97.1
Pretectal area
nTPM: 118.4
2316 Male, age 76, right hemisphere 135.1
2273 Male, age 74, both hemispheres 133.3
2667 Female, age 75, unknown 128.0
1817 Female, age 42, unknown 123.9
2224 Female, age 72, unknown 116.9
2007 Male, age 72, unknown 116.7
1944 Female, age 72, unknown 115.9
1815 Male, age 53, unknown 110.7
2407 Male, age 75, both hemispheres 110.5
1816 Male, age 51, unknown 108.0
2825 Male, age 18, unknown 103.7
Red nucleus
nTPM: 122.3
1954 Female, age 42, unknown 142.5
2503 Female, age 72, unknown 141.7
2785 Male, age 18, unknown 136.6
1821 Female, age 72, unknown 134.7
2769 Male, age 72, unknown 130.5
1904 Male, age 53, unknown 130.4
1865 Male, age 51, unknown 129.7
2227 Male, age 72, unknown 127.5
2588 Male, age 74, left hemisphere 122.4
2823 Male, age 76, right hemisphere 99.1
2725 Female, age 75, unknown 86.6
2584 Male, age 75, left hemisphere 85.4
Substantia nigra
nTPM: 111.5
2583 Male, age 75, right hemisphere 123.7
2699 Male, age 18, unknown 121.1
1851 Male, age 51, unknown 120.4
1941 Male, age 53, unknown 117.1
1889 Female, age 72, unknown 111.1
1916 Female, age 42, unknown 107.7
2590 Female, age 75, unknown 106.5
2241 Male, age 72, unknown 106.4
2409 Female, age 72, unknown 102.1
2665 Male, age 74, both hemispheres 98.9
Superior colliculus
nTPM: 122.6
2664 Male, age 75, both hemispheres 177.4
1995 Male, age 72, unknown 139.3
1839 Male, age 51, unknown 131.3
2668 Female, age 75, unknown 128.0
1913 Female, age 42, unknown 127.7
2261 Male, age 18, unknown 111.5
2587 Male, age 74, left hemisphere 106.9
1796 Male, age 53, unknown 106.5
2087 Female, age 72, unknown 106.2
1895 Male, age 76, right hemisphere 91.7
Ventral tegmental area
nTPM: 103.0
2410 Female, age 72, unknown 110.1
1915 Female, age 42, unknown 108.6
2021 Male, age 53, unknown 106.9
1942 Male, age 51, unknown 104.7
2218 Male, age 76, both hemispheres 99.5
2223 Female, age 72, unknown 88.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.8
Samples: 139

Max nTPM: 47.0
Min nTPM: 4.6
Std nTPM: 6.7
Median nTPM: 12.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 47.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 41.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 39.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 37.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 28.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 26.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 26.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 25.8
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 23.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 22.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 22.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 148.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 148.8
FF:10158-103A5 76 years, female 148.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 138.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 135.7
Samples: 4

Max nTPM: 158.3
Min nTPM: 115.7
Sample A Female 145.9
Sample B Female 115.7
Sample C Male 122.8
Sample D Male 158.3
Midbrain
nTPM: 138.0
Samples: 4

Max nTPM: 161.5
Min nTPM: 118.8
Sample A Female 138.3
Sample B Female 161.5
Sample C Male 133.3
Sample D Male 118.8
Periaqueductal gray
nTPM: 133.3
Samples: 3

Max nTPM: 143.9
Min nTPM: 114.2
Sample B Female 143.9
Sample C Male 141.9
Sample D Male 114.2
Superior colliculi
nTPM: 114.0
Samples: 4

Max nTPM: 136.6
Min nTPM: 68.8
Sample A Female 136.6
Sample B Female 68.8
Sample C Male 131.6
Sample D Male 118.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.3
Samples: 4

Max nTPM: 10.3
Min nTPM: 7.2
Sample A Male 7.2
Sample B Male 9.6
Sample C Female 10.1
Sample D Female 10.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
71016573 Antisense, RP_050725_03_A01, Mouse strain C57BL/6J (56 days, male) 3.1
68631966 Antisense, RP_050125_01_D11, Mouse strain C57BL/6J (56 days, male) 0.8

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