HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi 		68.442
RNA expressioni
Consensus:62.8 nTPM
HPA Brain:136.5 nTPM
GTEx:62.8 nTPM
FANTOM5:86.9 Scaled Tags Per Million
Pig:114.0 nTPM
Mouse:113.9 nTPM
Allen mouse:16.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051452Antibody HPA056940
Glial cells Not detectedNot detected
Neuronal cells Not detectedMedium




HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA056940
Hippocampal formation mean intensity 68.442
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 51.064
Molecular layer of the dentate gyrus 64.662
Granular dentate gyrus 24.486
CA1 - oriens layer 53.552
CA1 - pyramidal layer 36.910
CA1 - radiatum layer 59.296
CA2 - oriens layer 68.442
CA2 - pyramidal layer 49.883
CA2 - radiatum layer 62.712
CA3 - oriens layer 51.927
CA3 - pyramidal layer 30.074
CA3 - radiatum layer 60.558
Stratum lucidum 26.355
Lacunosum moleculare 54.274
Subiculum 56.205

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 136.5
Sample id Sample description nTPM
Hippocampus
nTPM: 112.0
2148 Female, age 91, left hemisphere 135.8
2621 Female, age 67, right hemisphere 133.1
1855 Male, age 76, left hemisphere 105.5
1898 Male, age 80, left hemisphere 104.3
1911 Female, age 85, right hemisphere 102.5
2529 Female, age 94, left hemisphere 90.8
Dentate gyrus
nTPM: 120.5
1927 Female, age 91, both hemispheres 165.3
2531 Female, age 67, both hemispheres 136.7
2530 Female, age 94, left hemisphere 126.9
2010 Male, age 76, both hemispheres 109.4
2246 Female, age 85, both hemispheres 95.7
2528 Male, age 74, both hemispheres 89.1
Entorhinal gyrus
nTPM: 93.2
2613 Female, age 94, left hemisphere 127.7
2686 Male, age 75, right hemisphere 92.0
2764 Male, age 80, right hemisphere 91.0
1938 Female, age 85, left hemisphere 88.1
1787 Male, age 76, left hemisphere 87.5
2117 Female, age 91, right hemisphere 72.7
Hippocampus, CA1
nTPM: 136.5
2749 Male, age 80, left hemisphere 246.3
2045 Male, age 76, both hemispheres 124.9
1873 Female, age 85, both hemispheres 112.6
2527 Male, age 74, both hemispheres 105.1
2082 Female, age 91, right hemisphere 93.4
Hippocampus, CA2
nTPM: 99.5
1963 Male, age 80, left hemisphere 134.9
1892 Male, age 76, both hemispheres 131.1
2437 Female, age 94, left hemisphere 93.0
2113 Female, age 91, right hemisphere 88.0
2249 Male, age 74, both hemispheres 87.1
1940 Female, age 85, left hemisphere 63.0
Hippocampus, CA3
nTPM: 134.4
2137 Male, age 80, left hemisphere 212.4
2620 Female, age 94, left hemisphere 176.6
2861 Female, age 67, both hemispheres 148.4
1867 Male, age 76, both hemispheres 111.1
2436 Male, age 74, both hemispheres 83.0
1891 Female, age 85, both hemispheres 74.6
Parahippocampal cortex
nTPM: 88.0
2245 Female, age 91, both hemispheres 144.4
2693 Female, age 94, both hemispheres 91.6
2250 Female, age 67, right hemisphere 91.3
2622 Female, age 67, right hemisphere 90.9
1990 Female, age 91, right hemisphere 81.3
2018 Male, age 76, both hemispheres 80.0
1933 Female, age 85, both hemispheres 79.8
1850 Male, age 80, both hemispheres 78.5
2692 Male, age 74, both hemispheres 72.3
2532 Female, age 72, left hemisphere 69.6
Perirhinal gyrus
nTPM: 89.4
1847 Female, age 91, left hemisphere 104.0
2521 Female, age 94, right hemisphere 97.4
1794 Male, age 80, right hemisphere 91.9
1841 Female, age 85, right hemisphere 78.7
2848 Male, age 76, right hemisphere 74.8
Subiculum
nTPM: 85.6
1901 Male, age 80, both hemispheres 108.9
2729 Female, age 91, right hemisphere 90.0
1977 Female, age 85, both hemispheres 84.6
2042 Male, age 76, both hemispheres 83.9
2619 Male, age 74, both hemispheres 73.6
2438 Female, age 94, left hemisphere 72.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 62.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 62.8
Samples: 197

Max nTPM: 169.6
Min nTPM: 14.0
Std nTPM: 29.4
Median nTPM: 56.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 169.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 140.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 137.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 132.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 122.7
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 121.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 118.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 117.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 117.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 116.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 116.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 86.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 86.9
FF:10169-103B7 60 years, female 95.5
FF:10153-102I9 76 years, female 78.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 114.0
Pig sample Sample description nTPM
Subiculum
nTPM: 74.1
Samples: 4

Max nTPM: 95.5
Min nTPM: 64.3
Sample A Female 95.5
Sample B Female 64.8
Sample C Male 71.7
Sample D Male 64.3
Dorsal hippocampus
nTPM: 114.0
Samples: 4

Max nTPM: 154.1
Min nTPM: 71.0
Sample A Female 154.1
Sample B Female 130.0
Sample C Male 71.0
Sample D Male 101.0
Entorhinal cortex
nTPM: 74.9
Samples: 4

Max nTPM: 91.8
Min nTPM: 64.3
Sample A Female 91.8
Sample B Female 64.3
Sample C Male 74.7
Sample D Male 68.7
Ventral hippocampus
nTPM: 99.7
Samples: 4

Max nTPM: 135.4
Min nTPM: 67.7
Sample A Female 90.5
Sample B Female 67.7
Sample C Male 105.1
Sample D Male 135.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 113.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 94.5
Samples: 4

Max nTPM: 104.6
Min nTPM: 82.6
Sample A Male 82.6
Sample B Male 94.1
Sample C Female 96.8
Sample D Female 104.6
Hippocampal formation
nTPM: 113.9
Samples: 4

Max nTPM: 130.5
Min nTPM: 99.4
Sample A Male 99.4
Sample B Male 110.1
Sample C Female 115.6
Sample D Female 130.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 16.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 16.5
70928198 Antisense, RP_050725_01_B12, Mouse strain C57BL/6J (56 days, male) 18.6
75694702 Antisense, RP_060518_03_H01, Mouse strain C57BL/6J (56 days, male) 14.4

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